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| Mutant Information |
|---|
| Mutant Name | FN4129-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4129-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37524972 | C-G | Homo | ||
| SBS | Chr1 | 37524976 | C-T | Homo | ||
| SBS | Chr11 | 11642319 | G-A | HET | STOP_GAINED | LOC_Os11g20150 |
| SBS | Chr11 | 26111829 | C-T | HET | ||
| SBS | Chr12 | 13953811 | T-A | HET | ||
| SBS | Chr12 | 14560306 | G-A | HET | ||
| SBS | Chr12 | 18024049 | A-G | HET | ||
| SBS | Chr12 | 19475755 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g32250 |
| SBS | Chr2 | 15753441 | C-T | HET | ||
| SBS | Chr2 | 26107944 | A-T | HET | ||
| SBS | Chr3 | 23123639 | G-A | Homo | ||
| SBS | Chr3 | 26935383 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g47590 |
| SBS | Chr3 | 5162870 | G-A | HET | STOP_GAINED | LOC_Os03g10180 |
| SBS | Chr3 | 5162871 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g10180 |
| SBS | Chr4 | 31426730 | C-T | Homo | ||
| SBS | Chr5 | 2526720 | A-T | HET | ||
| SBS | Chr6 | 12669740 | G-A | HET | ||
| SBS | Chr6 | 5197792 | C-T | Homo | ||
| SBS | Chr6 | 6627875 | G-A | HET | ||
| SBS | Chr6 | 7232502 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g13200 |
| SBS | Chr7 | 14805768 | G-A | HET | ||
| SBS | Chr7 | 15935281 | C-T | Homo | ||
| SBS | Chr7 | 5737207 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g10570 |
| SBS | Chr8 | 12324413 | C-T | Homo | ||
| SBS | Chr8 | 16176177 | C-T | HET | ||
| SBS | Chr9 | 21714456 | G-A | HET | ||
| SBS | Chr9 | 3750995 | A-C | HET | ||
| SBS | Chr9 | 7956969 | T-G | HET | ||
| SBS | Chr9 | 9473497 | T-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 8772421 | 8772439 | 18 | |
| Deletion | Chr2 | 8888674 | 8888675 | 1 | |
| Deletion | Chr6 | 8908001 | 8927000 | 18999 | 3 |
| Deletion | Chr6 | 8931001 | 9064000 | 132999 | 17 |
| Deletion | Chr6 | 9081001 | 9111000 | 29999 | 5 |
| Deletion | Chr6 | 9113001 | 9293000 | 179999 | 29 |
| Deletion | Chr6 | 9303001 | 9347000 | 43999 | 6 |
| Deletion | Chr11 | 10970263 | 10970267 | 4 | LOC_Os11g19200 |
| Deletion | Chr9 | 14313214 | 14313215 | 1 | |
| Deletion | Chr11 | 15633001 | 15701000 | 67999 | 8 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 18798651 | 18798652 | 2 | LOC_Os11g31970 |
| Insertion | Chr2 | 13195866 | 13195866 | 1 | |
| Insertion | Chr8 | 6443611 | 6443669 | 59 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 21035 | 86668 | LOC_Os07g01030 |
| Inversion | Chr7 | 21045 | 86678 | LOC_Os07g01030 |
| Inversion | Chr1 | 16993796 | 17540891 | LOC_Os01g32044 |
| Inversion | Chr1 | 16993808 | 17540899 | LOC_Os01g32044 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 490061 | Chr2 | 12010920 | 2 |
| Translocation | Chr9 | 490064 | Chr2 | 12010788 | 2 |
| Translocation | Chr4 | 3615340 | Chr1 | 21959762 | LOC_Os01g39060 |
| Translocation | Chr10 | 8053077 | Chr7 | 14407267 | 2 |
| Translocation | Chr11 | 10218331 | Chr2 | 2716298 | |
| Translocation | Chr12 | 14276615 | Chr3 | 6548021 | |
| Translocation | Chr7 | 17028577 | Chr2 | 26723705 | |
| Translocation | Chr7 | 19449346 | Chr1 | 12114911 | |
| Translocation | Chr4 | 25986492 | Chr2 | 18076919 | 2 |