Search Nipponbare

Mutant Information

Mutant Name	FN414-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN414-S Alignment File
Seed Availability	No
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27610781	C-T	HET	INTERGENIC
SBS	Chr10	16876206	G-A	HOMO	INTRON
SBS	Chr11	10845900	C-T	HET	INTRON
SBS	Chr11	1239364	T-C	HOMO	INTERGENIC
SBS	Chr12	7597021	T-A	HET	INTERGENIC
SBS	Chr2	12569877	T-A	HOMO	INTERGENIC
SBS	Chr2	12569880	C-A	HOMO	UTR_5_PRIME
SBS	Chr2	19181468	G-T	HET	INTERGENIC
SBS	Chr2	29020687	T-C	HET	UTR_5_PRIME
SBS	Chr2	31919040	A-T	HOMO	INTRON
SBS	Chr2	33687588	A-C	HET	INTERGENIC
SBS	Chr2	34383037	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr2	9425374	T-C	HOMO	INTERGENIC
SBS	Chr3	11903888	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g20980
SBS	Chr3	200010	G-T	HET	INTERGENIC
SBS	Chr3	35225100	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g62190
SBS	Chr4	10606396	G-A	HET	INTERGENIC
SBS	Chr4	25088817	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g42399
SBS	Chr4	26872782	A-G	HET	INTERGENIC
SBS	Chr4	30846725	C-T	HET	INTERGENIC
SBS	Chr4	34563303	T-A	HOMO	INTERGENIC
SBS	Chr4	5609214	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g10380
SBS	Chr4	5609215	C-A	HET	STOP_GAINED	LOC_Os04g10380
SBS	Chr4	8298864	C-T	HET	INTERGENIC
SBS	Chr4	9612683	G-A	HET	INTERGENIC
SBS	Chr5	11632087	T-G	HET	INTRON
SBS	Chr5	14298692	A-T	HET	INTRON
SBS	Chr5	7275038	T-A	HET	INTERGENIC
SBS	Chr5	8718539	G-C	HET	INTERGENIC
SBS	Chr7	17673566	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	26169817	G-A	HOMO	INTERGENIC
SBS	Chr7	27695418	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g46410
SBS	Chr8	10756048	C-G	HET	INTERGENIC
SBS	Chr9	2059577	A-G	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1001	21000	20000	5
Deletion	Chr4	1196001	1290000	94000	12
Deletion	Chr4	1496389	1496390	1
Deletion	Chr7	2210221	2210222	1	LOC_Os07g05010
Deletion	Chr2	2683493	2683506	13	LOC_Os02g05550
Deletion	Chr6	2786496	2786497	1
Deletion	Chr2	2939376	2939380	4	LOC_Os02g05920
Deletion	Chr11	3277741	3277746	5
Deletion	Chr6	6416936	6416937	1
Deletion	Chr8	11287704	11287716	12
Deletion	Chr2	13085881	13085891	10
Deletion	Chr2	14071226	14071233	7
Deletion	Chr2	15201858	15201859	1
Deletion	Chr4	16388804	16388807	3	LOC_Os04g27730
Deletion	Chr2	19060828	19060834	6
Deletion	Chr8	20060886	20060887	1	LOC_Os08g32390
Deletion	Chr2	20778896	20778908	12
Deletion	Chr10	21201920	21201922	2	LOC_Os10g39670
Deletion	Chr1	21626691	21626700	9	LOC_Os01g38480
Deletion	Chr5	22239480	22254715	15235	2
Deletion	Chr8	23230384	23230387	3
Deletion	Chr12	23829856	23829870	14
Deletion	Chr1	23989302	23989304	2
Deletion	Chr8	24351108	24351125	17
Deletion	Chr4	25364162	25364164	2
Deletion	Chr1	29172241	29172242	1
Deletion	Chr4	30999971	31001220	1249	LOC_Os04g52180
Deletion	Chr2	31932012	31932013	1
Deletion	Chr1	34007914	34007919	5
Deletion	Chr1	36444443	36444451	8

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	18412677	18412677	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7726255	7967620	2
Inversion	Chr3	12006663	12554849	LOC_Os03g21080
Inversion	Chr3	12006679	12554855	LOC_Os03g21080
Inversion	Chr11	21096575	28850603	2
Inversion	Chr2	31915325	32371085
Inversion	Chr2	31915340	32371090

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	12049967	Chr4	27823534
Translocation	Chr10	19158654	Chr2	26014056
Translocation	Chr10	19158658	Chr2	25512988	LOC_Os02g42406
Translocation	Chr5	22239490	Chr3	12158520	LOC_Os05g37930
Translocation	Chr5	22254714	Chr3	12158511
Translocation	Chr11	26099974	Chr8	17492313	2
Translocation	Chr12	26150506	Chr2	23421992	LOC_Os02g38760
Translocation	Chr11	28850604	Chr1	19154520	2

Main menu