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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29091694	C-A	HET
SBS	Chr2	8640446	C-T	Homo
SBS	Chr3	2893819	G-A	HET
SBS	Chr3	9847972	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g17700
SBS	Chr3	12505549	G-C	HET
SBS	Chr3	17987502	C-A	Homo
SBS	Chr3	18513064	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g32360
SBS	Chr3	27404607	A-G	Homo
SBS	Chr4	2597313	C-T	HET
SBS	Chr4	4793416	C-A	HET
SBS	Chr4	5711000	A-G	HET
SBS	Chr4	8859425	A-C	HET
SBS	Chr4	9037040	T-A	HET
SBS	Chr4	21531729	T-A	Homo
SBS	Chr4	30851457	G-A	Homo
SBS	Chr4	34286733	G-C	HET
SBS	Chr5	3849925	C-A	HET
SBS	Chr5	3849934	T-A	HET
SBS	Chr5	7876620	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g14100
SBS	Chr5	8668265	A-C	HET
SBS	Chr6	26226859	C-T	HET
SBS	Chr7	6004073	G-A	HET
SBS	Chr7	10033835	A-G	HET
SBS	Chr7	11265612	A-G	HET
SBS	Chr7	24203288	A-T	HET
SBS	Chr8	6736833	G-A	HET
SBS	Chr8	7721593	G-T	Homo
SBS	Chr8	17100498	C-A	HET
SBS	Chr8	17699940	T-C	HET
SBS	Chr8	19024992	T-C	Homo
SBS	Chr8	26196489	A-G	HET
SBS	Chr9	6537609	C-T	HET
SBS	Chr9	11606050	A-G	HET
SBS	Chr10	5761183	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g10480
SBS	Chr10	11064672	A-G	HET
SBS	Chr10	17434724	C-T	HET
SBS	Chr10	17434745	C-T	HET
SBS	Chr10	17434750	C-A	HET
SBS	Chr11	5084182	C-T	Homo

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	254645	254660	15
Deletion	Chr8	338443	338448	5
Deletion	Chr1	1819920	1819922	2
Deletion	Chr11	1995792	1995814	22	LOC_Os11g04680
Deletion	Chr3	2133859	2133865	6
Deletion	Chr2	7784134	7784137	3
Deletion	Chr4	8869001	8929000	59999	9
Deletion	Chr4	8939001	8996000	56999	11
Deletion	Chr4	9007001	9024000	16999	3
Deletion	Chr5	9149537	9149540	3
Deletion	Chr12	9857001	9972000	114999	16
Deletion	Chr12	9974001	10084000	109999	22
Deletion	Chr8	10974086	10974088	2
Deletion	Chr12	13498001	13530000	31999	5
Deletion	Chr9	15244973	15244983	10
Deletion	Chr3	15522583	15522585	2
Deletion	Chr6	18097374	18097395	21	LOC_Os06g31150
Deletion	Chr8	19101139	19101145	6
Deletion	Chr11	20913259	20913261	2
Deletion	Chr9	22344462	22344464	2
Deletion	Chr2	26440037	26440038	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	8511547	8511547	1	LOC_Os06g15020
Insertion	Chr4	22621177	22621394	218
Insertion	Chr5	15388851	15388852	2
Insertion	Chr5	29944845	29944845	1
Insertion	Chr10	12702991	12702991	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4753071	5251883
Inversion	Chr12	9388843	9527098	LOC_Os12g16400
Inversion	Chr12	9388872	9527313	LOC_Os12g16400
Inversion	Chr3	13507824	13559007

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3512181	Chr1	3439924
Translocation	Chr12	4130306	Chr2	22709085	2
Translocation	Chr8	4912290	Chr2	9373741
Translocation	Chr12	9527108	Chr3	16361385	LOC_Os03g28400
Translocation	Chr12	9527309	Chr3	16361386	LOC_Os03g28400
Translocation	Chr8	14880118	Chr3	23141744
Translocation	Chr6	23516344	Chr5	5212207	LOC_Os05g09330

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