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| Mutant Information |
|---|
| Mutant Name | FN4149-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4149-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22562284 | A-T | HET | ||
| SBS | Chr1 | 29824659 | A-T | HET | ||
| SBS | Chr1 | 4522473 | C-T | HET | ||
| SBS | Chr1 | 9318764 | C-T | Homo | ||
| SBS | Chr10 | 10440577 | C-A | Homo | ||
| SBS | Chr10 | 22262381 | G-A | HET | ||
| SBS | Chr11 | 26016058 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g43110 |
| SBS | Chr11 | 3393254 | C-A | Homo | ||
| SBS | Chr2 | 32574300 | G-T | Homo | ||
| SBS | Chr2 | 6201777 | G-A | HET | ||
| SBS | Chr3 | 4353049 | A-G | Homo | ||
| SBS | Chr4 | 1053075 | T-C | Homo | ||
| SBS | Chr4 | 15446326 | G-A | HET | ||
| SBS | Chr4 | 22072944 | G-A | HET | ||
| SBS | Chr4 | 27513595 | C-A | HET | ||
| SBS | Chr4 | 28344638 | A-G | HET | ||
| SBS | Chr5 | 13963083 | G-A | HET | ||
| SBS | Chr5 | 19244645 | A-G | HET | ||
| SBS | Chr5 | 21807705 | C-G | Homo | ||
| SBS | Chr5 | 25458455 | G-A | HET | ||
| SBS | Chr5 | 7943411 | A-T | Homo | ||
| SBS | Chr5 | 7943412 | A-T | Homo | ||
| SBS | Chr5 | 7943413 | C-T | Homo | ||
| SBS | Chr6 | 2523938 | C-T | HET | ||
| SBS | Chr7 | 15251549 | A-T | HET | ||
| SBS | Chr7 | 15813403 | G-A | Homo | ||
| SBS | Chr7 | 17505771 | T-C | Homo | ||
| SBS | Chr7 | 18493664 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g31240 |
| SBS | Chr8 | 10365879 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g16920 |
| SBS | Chr8 | 14319764 | C-T | Homo | ||
| SBS | Chr8 | 4052128 | G-A | HET | ||
| SBS | Chr9 | 10902320 | G-A | HET | ||
| SBS | Chr9 | 13437460 | G-C | HET | ||
| SBS | Chr9 | 17588732 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g28930 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1110460 | 1110461 | 1 | LOC_Os06g03020 |
| Deletion | Chr1 | 1739254 | 1739257 | 3 | LOC_Os01g04010 |
| Deletion | Chr12 | 2647001 | 2700000 | 52999 | 13 |
| Deletion | Chr7 | 3467548 | 3467557 | 9 | |
| Deletion | Chr4 | 4044750 | 4044761 | 11 | |
| Deletion | Chr8 | 10982232 | 10982239 | 7 | LOC_Os08g17890 |
| Deletion | Chr8 | 15964764 | 15964771 | 7 | |
| Deletion | Chr9 | 21606001 | 21898000 | 291999 | 50 |
| Deletion | Chr9 | 21941001 | 22248000 | 306999 | 55 |
| Deletion | Chr12 | 24011322 | 24011324 | 2 | |
| Deletion | Chr2 | 27468099 | 27468101 | 2 | |
| Deletion | Chr7 | 28373065 | 28373070 | 5 | |
| Deletion | Chr7 | 29408014 | 29408015 | 1 | |
| Deletion | Chr1 | 36879428 | 36879430 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 29862972 | 29862972 | 1 | |
| Insertion | Chr8 | 17058226 | 17058264 | 39 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 21231526 | 21607352 | LOC_Os09g36810 |
| Inversion | Chr4 | 22567215 | 22760546 | |
| Inversion | Chr4 | 22567219 | 22760556 | |
| Inversion | Chr1 | 26657171 | 26657437 | LOC_Os01g46760 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 20368023 | Chr3 | 16525221 | 2 |
| Translocation | Chr6 | 23399511 | Chr5 | 365671 | LOC_Os05g01610 |
| Translocation | Chr12 | 26428795 | Chr5 | 15046387 | LOC_Os12g42550 |
| Translocation | Chr12 | 26428815 | Chr5 | 15043834 | 2 |