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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6678203	T-C	HET
SBS	Chr2	6453910	G-C	Homo
SBS	Chr2	31561147	A-G	HET
SBS	Chr3	3759408	C-T	HET
SBS	Chr3	8616071	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15620
SBS	Chr3	15714837	T-C	Homo
SBS	Chr3	17283786	G-A	Homo
SBS	Chr3	31995028	T-A	HET
SBS	Chr4	15969188	C-T	HET
SBS	Chr4	19566945	G-A	Homo
SBS	Chr4	27387294	A-G	Homo
SBS	Chr4	29864197	G-A	Homo
SBS	Chr4	34499168	C-T	Homo
SBS	Chr5	2925805	G-A	HET
SBS	Chr5	10778342	T-A	HET
SBS	Chr5	14294706	G-A	HET
SBS	Chr5	29907288	T-C	HET
SBS	Chr6	3561983	T-C	HET
SBS	Chr7	2892580	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05960
SBS	Chr7	2892581	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05960
SBS	Chr7	26103831	A-G	HET
SBS	Chr8	1156011	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g02750
SBS	Chr8	23822642	G-A	HET
SBS	Chr8	23822658	G-A	HET
SBS	Chr8	25519249	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g40310
SBS	Chr9	6443111	C-A	HET
SBS	Chr9	15230685	C-T	HET
SBS	Chr9	19300280	C-T	HET
SBS	Chr9	22398199	T-C	HET
SBS	Chr10	4955723	A-G	Homo
SBS	Chr10	9009080	C-T	Homo
SBS	Chr11	14107685	G-A	HET
SBS	Chr11	26066165	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g43210
SBS	Chr12	12360854	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g21950
SBS	Chr12	13800085	T-C	Homo
SBS	Chr12	14970991	G-A	Homo
SBS	Chr12	17319744	C-T	HET
SBS	Chr12	18804958	G-A	Homo
SBS	Chr12	22383789	C-T	HET
SBS	Chr12	23129762	A-G	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	330418	330431	13
Deletion	Chr12	8255681	8255682	1	LOC_Os12g14470
Deletion	Chr3	9335023	9335024	1
Deletion	Chr12	12421310	12421319	9
Deletion	Chr4	17209001	17227000	17999	2
Deletion	Chr4	17229001	17284000	54999	7
Deletion	Chr8	17488855	17488866	11
Deletion	Chr7	18341831	18341833	2	LOC_Os07g30980
Deletion	Chr7	22042877	22042884	7
Deletion	Chr1	25990717	25990718	1
Deletion	Chr4	27917335	27917340	5
Deletion	Chr6	30712942	30712943	1
Deletion	Chr1	42539333	42539342	9

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	18915344	18915345	2
Insertion	Chr4	31229861	31229862	2
Insertion	Chr4	33911351	33911351	1

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1994091	2894305	LOC_Os07g04520
Inversion	Chr7	1994096	2894312	LOC_Os07g04520
Inversion	Chr2	2871903	2903241	2
Inversion	Chr2	2871916	2903246	2
Inversion	Chr6	4635702	4969200	LOC_Os06g09750
Inversion	Chr6	4969185	5041186	2
Inversion	Chr1	12402431	13043250
Inversion	Chr1	12402736	13056221
Inversion	Chr3	13460189	13548308
Inversion	Chr3	19861733	19861940

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1195001	Chr3	34057191	LOC_Os03g59810
Translocation	Chr8	3767118	Chr1	12402433
Translocation	Chr8	3767141	Chr1	12402725
Translocation	Chr6	6822789	Chr4	27350911
Translocation	Chr9	7837398	Chr4	18954423
Translocation	Chr8	8561243	Chr1	14847320	LOC_Os08g14290
Translocation	Chr8	10070851	Chr5	5212167	LOC_Os05g09330
Translocation	Chr9	10309860	Chr4	1632054
Translocation	Chr6	13698853	Chr1	2504344
Translocation	Chr8	22388823	Chr2	16788107	2
Translocation	Chr11	26002459	Chr6	20608561

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