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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	2412977	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g05070
SBS	Chr2	11687144	A-G	HET
SBS	Chr2	24806907	T-C	HET
SBS	Chr3	7297144	T-A	HET
SBS	Chr3	11053574	C-T	HET
SBS	Chr3	17087787	A-T	HET
SBS	Chr3	34279729	A-T	Homo
SBS	Chr4	2201666	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04600
SBS	Chr4	19950274	G-T	Homo
SBS	Chr4	21347049	C-T	HET
SBS	Chr4	34563303	T-A	HET
SBS	Chr5	17772781	A-G	HET
SBS	Chr5	19161752	G-A	HET
SBS	Chr5	19578593	A-T	HET
SBS	Chr5	24455362	A-T	HET
SBS	Chr6	14580905	T-C	HET
SBS	Chr7	1596492	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g03820
SBS	Chr7	10696302	G-A	HET
SBS	Chr7	15404764	G-A	HET
SBS	Chr7	21148057	T-C	HET
SBS	Chr7	22969271	A-G	HET
SBS	Chr7	22973473	A-G	HET
SBS	Chr7	23976674	C-T	HET
SBS	Chr8	10620777	C-A	HET
SBS	Chr9	3728004	G-A	HET
SBS	Chr9	9827112	T-C	Homo
SBS	Chr10	2823002	G-A	Homo
SBS	Chr10	19777592	T-C	HET
SBS	Chr10	21264263	C-T	HET
SBS	Chr11	15969834	A-T	HET
SBS	Chr11	16468975	G-T	HET
SBS	Chr11	16504488	C-T	Homo
SBS	Chr11	23916640	C-T	HET
SBS	Chr11	23916642	A-T	HET
SBS	Chr11	27744511	T-C	HET
SBS	Chr12	7898297	G-T	HET
SBS	Chr12	9725645	A-T	HET
SBS	Chr12	9725647	G-C	HET
SBS	Chr12	14781949	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25530
SBS	Chr12	21473627	T-C	HET
SBS	Chr12	22298849	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36440
SBS	Chr12	27207326	C-A	HET

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	391182	391187	5	LOC_Os06g01650
Deletion	Chr7	2023256	2023257	1	LOC_Os07g04560
Deletion	Chr2	2711735	2711736	1
Deletion	Chr3	11092688	11092700	12
Deletion	Chr7	11798568	11798569	1	LOC_Os07g20430
Deletion	Chr8	11821330	11821335	5
Deletion	Chr8	13836528	13836538	10
Deletion	Chr8	14016867	14016869	2	LOC_Os08g23210
Deletion	Chr11	15641150	15641152	2
Deletion	Chr12	16186821	16186822	1
Deletion	Chr5	17626001	17682000	55999	10
Deletion	Chr7	17740262	17740266	4
Deletion	Chr9	17898500	17898507	7
Deletion	Chr9	18843653	18843656	3
Deletion	Chr6	20099074	20099080	6
Deletion	Chr12	20168001	20214000	45999	10
Deletion	Chr12	20216442	20216443	1	LOC_Os12g33450
Deletion	Chr12	20219001	20248000	28999	5
Deletion	Chr12	20258001	20416000	157999	31
Deletion	Chr2	20697209	20697211	2
Deletion	Chr8	22193322	22193327	5
Deletion	Chr1	24041172	24041173	1
Deletion	Chr11	27232549	27232559	10
Deletion	Chr3	34007676	34007681	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	30590260	30590261	2
Insertion	Chr10	1332713	1332713	1	LOC_Os10g03150
Insertion	Chr6	13904097	13904149	53
Insertion	Chr7	20438005	20438006	2

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12075837	12236314	LOC_Os06g21170
Inversion	Chr6	12128227	12236315	LOC_Os06g21170
Inversion	Chr1	12225178	12225509	LOC_Os01g21790
Inversion	Chr5	19204527	19580417	LOC_Os05g32780
Inversion	Chr5	19219778	19580556
Inversion	Chr12	20767377	20767923
Inversion	Chr12	20767392	20768109
Inversion	Chr11	22853733	23223008	LOC_Os11g39000
Inversion	Chr11	22853744	23223013	LOC_Os11g39000
Inversion	Chr1	23883864	23884125	LOC_Os01g42120

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3239243	Chr3	2174168	LOC_Os10g06300
Translocation	Chr6	13146230	Chr3	2131246
Translocation	Chr12	19123238	Chr9	5377706	LOC_Os12g31780
Translocation	Chr12	19125984	Chr9	5377687	LOC_Os09g09890
Translocation	Chr12	19126005	Chr7	2309611
Translocation	Chr12	19128133	Chr7	2309604	LOC_Os12g31790
Translocation	Chr5	19204533	Chr2	8794011	LOC_Os05g32780
Translocation	Chr5	19219767	Chr2	8794007
Translocation	Chr12	19447633	Chr1	23373052
Translocation	Chr6	19969614	Chr1	25555964	LOC_Os01g45030
Translocation	Chr8	27378839	Chr2	14991309	LOC_Os08g43320

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