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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14878619	C-A	HET	INTERGENIC
SBS	Chr1	4700157	A-G	HET	INTERGENIC
SBS	Chr1	5744517	A-G	HET	INTERGENIC
SBS	Chr1	5864740	C-A	HET	INTERGENIC
SBS	Chr1	7351845	G-C	HET	STOP_LOST	LOC_Os01g13190
SBS	Chr1	8521412	C-T	HET	INTRON
SBS	Chr10	23057660	A-T	HOMO	UTR_3_PRIME
SBS	Chr11	20783228	T-A	HOMO	INTERGENIC
SBS	Chr12	11822134	C-T	HOMO	INTRON
SBS	Chr12	13040224	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	20359181	A-T	HET	INTERGENIC
SBS	Chr12	9194365	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	23796244	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	3598467	C-T	HET	INTERGENIC
SBS	Chr3	15264946	C-G	HET	INTRON
SBS	Chr3	21454976	T-C	HET	INTERGENIC
SBS	Chr3	27593594	T-C	HET	INTERGENIC
SBS	Chr3	33139421	C-T	HOMO	INTRON
SBS	Chr3	33139422	A-T	HOMO	INTRON
SBS	Chr3	33139426	C-G	HOMO	INTRON
SBS	Chr3	9793812	G-A	HET	INTERGENIC
SBS	Chr3	9793813	G-T	HET	INTERGENIC
SBS	Chr4	24026286	T-G	HOMO	INTERGENIC
SBS	Chr4	9671104	A-G	HET	INTERGENIC
SBS	Chr5	20860796	C-T	HOMO	INTERGENIC
SBS	Chr6	14412109	G-C	HOMO	INTERGENIC
SBS	Chr6	1616217	G-C	HET	INTRON
SBS	Chr6	23143062	A-G	HET	INTERGENIC
SBS	Chr8	7985064	G-T	HOMO	INTRON
SBS	Chr8	8359394	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g13950
SBS	Chr9	18578924	T-G	HET	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	132001	416000	284000	49
Deletion	Chr6	1614168	1614169	1	LOC_Os06g03980
Deletion	Chr12	1898822	1898823	1
Deletion	Chr9	2746186	2746189	3
Deletion	Chr7	7265466	7265468	2
Deletion	Chr10	8295574	8295584	10	LOC_Os10g16640
Deletion	Chr8	8941088	8941101	13
Deletion	Chr2	10917171	10917172	1
Deletion	Chr12	12594529	12594530	1
Deletion	Chr8	12762146	12762147	1	LOC_Os08g21390
Deletion	Chr9	14806864	14806866	2
Deletion	Chr9	14886312	14912960	26648	3
Deletion	Chr1	15061869	15061899	30
Deletion	Chr8	18828066	18828080	14
Deletion	Chr3	20618829	20618835	6
Deletion	Chr2	21111038	21111047	9	LOC_Os02g35150
Deletion	Chr10	21363718	21363736	18
Deletion	Chr10	22642628	22643827	1199	LOC_Os10g42100
Deletion	Chr3	23135988	23135998	10
Deletion	Chr4	33008733	33008746	13
Deletion	Chr2	33736157	33736162	5

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12717709	12717709	1
Insertion	Chr11	18493101	18493101	1
Insertion	Chr12	10083852	10083852	1
Insertion	Chr2	21816393	21816394	2
Insertion	Chr6	8448494	8448495	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5670352	6652992	LOC_Os04g10434
Inversion	Chr6	10134694	10182800
Inversion	Chr5	17546296	18720089
Inversion	Chr3	33110778	33390418	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4746036	Chr9	13583006
Translocation	Chr8	9079818	Chr5	1328486
Translocation	Chr6	10016764	Chr2	19406593	2
Translocation	Chr6	10016983	Chr2	19406590	2
Translocation	Chr9	14886314	Chr2	28144336	LOC_Os02g46190
Translocation	Chr9	14912954	Chr2	28144331	LOC_Os02g46190
Translocation	Chr8	17314224	Chr6	30449509	2
Translocation	Chr3	33110887	Chr1	37157220	2
Translocation	Chr3	33390435	Chr1	37157264	2

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