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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11847481	T-G	HET	INTERGENIC
SBS	Chr1	23437239	T-C	HET	INTERGENIC
SBS	Chr1	23693797	T-A	HET	INTERGENIC
SBS	Chr1	34237930	C-A	HOMO	INTRON
SBS	Chr10	2723309	G-C	HET	INTERGENIC
SBS	Chr10	5197354	G-C	HET	INTERGENIC
SBS	Chr11	9917967	A-C	HET	INTERGENIC
SBS	Chr12	13679842	G-C	HOMO	INTERGENIC
SBS	Chr12	16386232	C-T	HET	INTERGENIC
SBS	Chr2	25101204	C-A	HET	STOP_GAINED	LOC_Os02g41750
SBS	Chr2	25101205	T-C	HET	SYNONYMOUS_CODING
SBS	Chr3	19453900	T-A	HET	INTERGENIC
SBS	Chr3	23132909	T-G	HET	INTERGENIC
SBS	Chr4	13582699	G-A	HOMO	INTRON
SBS	Chr4	22579487	G-A	HET	INTERGENIC
SBS	Chr4	25161183	T-A	HET	INTERGENIC
SBS	Chr4	28297502	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	29736741	G-A	HOMO	INTERGENIC
SBS	Chr4	32815961	C-T	HET	INTERGENIC
SBS	Chr5	18882989	C-G	HET	INTRON
SBS	Chr5	21128111	A-C	HET	INTRON
SBS	Chr5	27057981	T-A	HET	INTRON
SBS	Chr5	27057982	A-T	HET	INTRON
SBS	Chr5	5747031	G-A	HOMO	INTERGENIC
SBS	Chr5	6162575	G-A	HOMO	INTERGENIC
SBS	Chr6	12370988	G-A	HET	INTERGENIC
SBS	Chr6	29011424	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr7	25332014	A-T	HET	INTERGENIC
SBS	Chr7	6771097	T-A	HET	INTERGENIC
SBS	Chr8	157044	G-A	HET	INTERGENIC
SBS	Chr8	21029939	T-C	HET	INTERGENIC
SBS	Chr8	5207026	C-T	HET	INTERGENIC
SBS	Chr8	9753767	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g16000
SBS	Chr9	18340133	C-A	HOMO	INTRON
SBS	Chr9	1939001	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g03820
SBS	Chr9	3199807	C-T	HOMO	INTRON
SBS	Chr9	6127691	G-T	HOMO	STOP_GAINED	LOC_Os09g11030
SBS	Chr9	6127692	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g11030

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	299156	299162	6
Deletion	Chr1	3644000	3644007	7
Deletion	Chr7	4828646	4828652	6
Deletion	Chr2	4898962	4898972	10
Deletion	Chr1	5001711	5033544	31833	7
Deletion	Chr2	6609463	6609469	6	LOC_Os02g12660
Deletion	Chr7	7949118	7949119	1
Deletion	Chr9	9300615	9300633	18
Deletion	Chr11	10627520	10627527	7
Deletion	Chr1	10640708	10640710	2
Deletion	Chr1	11009001	11133000	124000	14
Deletion	Chr6	12399322	12399334	12
Deletion	Chr3	13247409	13247460	51	LOC_Os03g22900
Deletion	Chr2	13431056	13431057	1	LOC_Os02g22500
Deletion	Chr8	14216800	14216805	5	LOC_Os08g23480
Deletion	Chr4	14232629	14232650	21
Deletion	Chr8	18750789	18750802	13
Deletion	Chr8	19123887	19123888	1
Deletion	Chr12	19270001	19330000	60000	6
Deletion	Chr4	19507783	19507788	5
Deletion	Chr5	21170463	21170491	28
Deletion	Chr5	21184248	21184256	8
Deletion	Chr3	27139989	27139991	2	LOC_Os03g47804
Deletion	Chr6	29011108	29011109	1	LOC_Os06g47980
Deletion	Chr6	30446425	30446426	1
Deletion	Chr3	32761226	32761227	1
Deletion	Chr1	33765792	33770302	4510	2
Deletion	Chr1	34036917	34043963	7046	LOC_Os01g58910
Deletion	Chr1	41000976	41000977	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	19039861	19039862	2
Insertion	Chr3	31100647	31100648	2
Insertion	Chr7	3223558	3223561	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	25994560	27166913

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	22729736	Chr1	24726875
Translocation	Chr11	28162516	Chr5	14142176	LOC_Os11g46880

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