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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18989041	T-C	Homo
SBS	Chr1	20851594	C-A	HET
SBS	Chr1	30538071	G-A	Homo
SBS	Chr1	31960300	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g55470
SBS	Chr1	37215083	G-A	HET	STOP_GAINED	LOC_Os01g64070
SBS	Chr2	2500024	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g05220
SBS	Chr2	10495757	C-A	HET
SBS	Chr2	24515890	C-T	HET
SBS	Chr2	24515894	A-G	HET
SBS	Chr3	191829	C-G	HET
SBS	Chr3	14090917	G-C	HET
SBS	Chr3	17215007	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30150
SBS	Chr3	35920510	T-G	HET
SBS	Chr4	1481509	C-T	HET
SBS	Chr4	21058187	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g34760
SBS	Chr4	22209905	C-A	HET
SBS	Chr4	23756326	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39890
SBS	Chr5	1226990	A-G	HET
SBS	Chr5	7799717	T-G	HET
SBS	Chr5	7800024	A-T	HET
SBS	Chr5	10643710	G-A	HET
SBS	Chr5	24448941	C-A	HET
SBS	Chr6	9387965	A-G	HET
SBS	Chr6	30304613	G-A	HET	SPLICE_SITE_DONOR	LOC_Os06g50030
SBS	Chr7	5860634	G-A	HET
SBS	Chr7	13140862	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g23310
SBS	Chr8	1544448	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g03330
SBS	Chr8	13547410	A-G	HET
SBS	Chr8	23202615	G-T	HET
SBS	Chr9	14889770	G-T	HET
SBS	Chr9	20820374	T-C	HET
SBS	Chr10	2381917	A-T	Homo
SBS	Chr10	9381625	G-A	HET
SBS	Chr10	10769997	G-A	HET
SBS	Chr10	21083617	G-A	HET
SBS	Chr11	2229216	A-T	HET
SBS	Chr11	23426205	T-C	HET
SBS	Chr12	2798497	C-T	Homo
SBS	Chr12	3475695	A-G	HET
SBS	Chr12	9359271	T-A	HET
SBS	Chr12	13504013	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g23770
SBS	Chr12	14082897	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24610

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1607586	1607587	1
Deletion	Chr7	5305050	5305052	2
Deletion	Chr3	5328089	5328131	42	LOC_Os03g10469
Deletion	Chr12	5659391	5659393	2	LOC_Os12g10610
Deletion	Chr6	6016055	6016061	6
Deletion	Chr10	6927113	6927202	89	LOC_Os10g12450
Deletion	Chr3	7553402	7553404	2	LOC_Os03g13920
Deletion	Chr3	7780269	7780283	14
Deletion	Chr12	9936999	9937000	1
Deletion	Chr1	10186488	10186490	2
Deletion	Chr12	12647827	12647832	5
Deletion	Chr3	13471854	13471855	1
Deletion	Chr10	20335001	20357000	21999	5
Deletion	Chr1	20434959	20434961	2
Deletion	Chr1	21402001	21489000	86999	8

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	34287786	34287789	4
Insertion	Chr3	15435065	15435066	2
Insertion	Chr2	9396604	9396604	1
Insertion	Chr2	24759160	24759160	1
Insertion	Chr4	12508144	12508291	148
Insertion	Chr7	24941088	24941088	1
Insertion	Chr8	11542155	11542155	1
Insertion	Chr10	7670349	7670349	1
Insertion	Chr10	20569587	20569587	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	9410855	9468126
Inversion	Chr6	9410863	9472107
Inversion	Chr5	23644507	24252108	LOC_Os05g40260
Inversion	Chr5	24252452	24795251	LOC_Os05g42370
Inversion	Chr11	27701516	27724824	2

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	722618	Chr3	28717930
Translocation	Chr7	1241762	Chr1	39841277
Translocation	Chr7	2744857	Chr4	35498044
Translocation	Chr10	5128226	Chr3	13364667	2
Translocation	Chr4	5215665	Chr1	1043678	LOC_Os04g09720
Translocation	Chr10	6582737	Chr9	7136331	2
Translocation	Chr3	7764497	Chr2	34428538	LOC_Os02g56270
Translocation	Chr3	7764498	Chr2	34427335
Translocation	Chr8	12465040	Chr4	34006287
Translocation	Chr7	12767028	Chr6	9472100
Translocation	Chr7	12767032	Chr6	9468128
Translocation	Chr7	21189500	Chr4	13727361
Translocation	Chr6	23465828	Chr4	20896893

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