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Mutant Information

Mutant Name	FN429-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN429-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2662527	G-A	HOMO	INTERGENIC
SBS	Chr1	3905569	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	39340831	C-A	HET	SYNONYMOUS_CODING
SBS	Chr10	21816941	G-A	HOMO	INTERGENIC
SBS	Chr10	7752556	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g14795
SBS	Chr11	18877542	G-A	HET	INTERGENIC
SBS	Chr11	21272719	C-T	HET	INTERGENIC
SBS	Chr11	22038668	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37320
SBS	Chr11	23881667	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40050
SBS	Chr12	12636112	T-G	HET	INTRON
SBS	Chr12	13078840	G-T	HET	INTERGENIC
SBS	Chr12	14283473	T-A	HET	INTERGENIC
SBS	Chr12	17457285	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29380
SBS	Chr12	22908954	A-T	HET	INTERGENIC
SBS	Chr12	4928108	C-T	HET	INTRON
SBS	Chr2	19744260	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	23630707	T-A	HOMO	INTERGENIC
SBS	Chr2	32081505	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g52420
SBS	Chr3	21611196	T-C	HET	INTERGENIC
SBS	Chr3	22717	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	30694461	G-C	HOMO	UTR_3_PRIME
SBS	Chr4	17407611	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29330
SBS	Chr4	1926561	C-T	HET	INTERGENIC
SBS	Chr4	4381115	G-A	HOMO	INTERGENIC
SBS	Chr5	17177457	C-T	HET	INTERGENIC
SBS	Chr5	22099348	T-G	HOMO	INTERGENIC
SBS	Chr5	5295969	G-C	HET	SYNONYMOUS_CODING
SBS	Chr6	13847285	T-C	HOMO	INTERGENIC
SBS	Chr6	14857884	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	14259863	C-T	HET	INTERGENIC
SBS	Chr7	18011209	G-T	HET	INTERGENIC
SBS	Chr7	28247783	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g47260
SBS	Chr7	29249124	A-G	HET	SPLICE_SITE_REGION
SBS	Chr8	10982403	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g17890
SBS	Chr8	16087853	G-T	HOMO	INTERGENIC
SBS	Chr8	16087856	A-G	HOMO	INTERGENIC
SBS	Chr8	2546531	T-A	HET	SYNONYMOUS_CODING
SBS	Chr9	12042302	A-G	HET	INTERGENIC
SBS	Chr9	12908568	T-C	HET	INTERGENIC
SBS	Chr9	6474717	C-T	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	172088	172092	4
Deletion	Chr2	708451	708495	44
Deletion	Chr8	1537042	1537046	4	LOC_Os08g03310
Deletion	Chr3	3250001	3250003	2
Deletion	Chr12	3574320	3574330	10	LOC_Os12g07270
Deletion	Chr3	3909786	3909788	2
Deletion	Chr6	4793476	4793477	1
Deletion	Chr4	5348796	5348797	1
Deletion	Chr6	6161630	6161631	1	LOC_Os06g11630
Deletion	Chr6	6678861	6678865	4	LOC_Os06g12320
Deletion	Chr8	8130054	8130056	2
Deletion	Chr12	10050420	10050451	31	LOC_Os12g17530
Deletion	Chr1	11909249	11909262	13	LOC_Os01g21320
Deletion	Chr11	12898408	12898412	4
Deletion	Chr12	12963530	12963539	9
Deletion	Chr3	15358422	15358432	10
Deletion	Chr4	15895711	15895797	86
Deletion	Chr8	16084549	16084550	1	LOC_Os08g26400
Deletion	Chr4	16603423	16603429	6	LOC_Os04g28120
Deletion	Chr2	18880276	18880288	12
Deletion	Chr7	19995303	19995312	9
Deletion	Chr7	20360120	20360121	1
Deletion	Chr11	21242754	21242770	16
Deletion	Chr4	21526224	21526229	5
Deletion	Chr1	22195170	22195175	5	LOC_Os01g39385
Deletion	Chr2	22382683	22382686	3	LOC_Os02g37050
Deletion	Chr3	22831793	22831800	7
Deletion	Chr6	24588059	24588069	10
Deletion	Chr8	25179440	25179446	6	LOC_Os08g39760
Deletion	Chr6	27589008	27589015	7	LOC_Os06g45560
Deletion	Chr3	31349668	31349681	13	LOC_Os03g55100
Deletion	Chr2	32081490	32081496	6	LOC_Os02g52420
Deletion	Chr2	32216566	32216571	5
Deletion	Chr4	34490206	34490212	6	LOC_Os04g57880
Deletion	Chr1	39135892	39135901	9

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	1623145	1623146	2
Insertion	Chr12	23551114	23551115	2
Insertion	Chr2	3073568	3073568	1
Insertion	Chr6	3999411	3999412	2
Insertion	Chr8	24487704	24487704	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	24719628	24939848

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	10453751	Chr2	12969273
Translocation	Chr11	18280684	Chr3	29622228
Translocation	Chr12	18702617	Chr11	23936814
Translocation	Chr12	20138349	Chr5	13277467	LOC_Os12g33280

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