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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10277886	A-G	Homo
SBS	Chr1	28962461	C-T	Homo
SBS	Chr1	507669	C-T	HET
SBS	Chr10	16791207	A-T	HET
SBS	Chr10	8377240	C-G	Homo
SBS	Chr11	14662231	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25700
SBS	Chr11	21765588	A-G	HET
SBS	Chr11	9990534	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17840
SBS	Chr12	17968647	G-T	HET
SBS	Chr12	22406307	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36590
SBS	Chr12	22816542	C-T	HET
SBS	Chr12	23280852	A-T	HET
SBS	Chr12	7921727	T-C	HET
SBS	Chr2	4414448	A-C	HET
SBS	Chr2	808228	G-A	HET
SBS	Chr3	16810630	T-A	HET
SBS	Chr3	18699629	G-C	HET
SBS	Chr3	28984926	A-G	HET
SBS	Chr3	3166432	A-G	HET
SBS	Chr4	31731092	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g53270
SBS	Chr4	33384195	A-T	HET
SBS	Chr4	7318829	C-A	Homo	STOP_GAINED	LOC_Os04g13220
SBS	Chr4	7318830	C-T	Homo
SBS	Chr5	1682944	C-A	HET
SBS	Chr5	19069240	C-T	HET
SBS	Chr5	880512	A-G	HET
SBS	Chr6	15597433	G-T	HET
SBS	Chr6	17856206	C-T	HET
SBS	Chr6	20297410	G-A	HET
SBS	Chr6	20790334	G-A	HET
SBS	Chr6	8526061	G-C	HET
SBS	Chr7	10965804	G-A	HET
SBS	Chr7	11368122	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g19200
SBS	Chr7	15178283	C-A	HET
SBS	Chr9	2160791	G-A	Homo
SBS	Chr9	22783791	A-T	Homo
SBS	Chr9	22783792	A-T	Homo

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1040178	1040180	2
Deletion	Chr4	4598001	4751000	152999	24
Deletion	Chr11	6449375	6449376	1
Deletion	Chr11	8000001	8049000	48999	6
Deletion	Chr4	11308052	11308054	2
Deletion	Chr8	13100644	13100645	1
Deletion	Chr2	13927001	13948000	20999	5
Deletion	Chr6	15302130	15302133	3
Deletion	Chr7	20247380	20247385	5
Deletion	Chr7	21453047	21453048	1
Deletion	Chr6	22873582	22873587	5
Deletion	Chr2	27401229	27401231	2
Deletion	Chr1	28852823	28852829	6
Deletion	Chr3	34638279	34638280	1	LOC_Os03g60960

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	21982395	21982395	1
Insertion	Chr4	15002505	15002505	1
Insertion	Chr4	18043888	18043889	2	LOC_Os04g30240
Insertion	Chr5	14584883	14584904	22
Insertion	Chr6	24914840	24914840	1
Insertion	Chr7	23604316	23604316	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5995601	6156034	LOC_Os04g11260
Inversion	Chr2	33822288	34195565	LOC_Os02g55220

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6169003	Chr3	15356587	2
Translocation	Chr12	9802432	Chr1	530979
Translocation	Chr3	10674142	Chr2	20649680
Translocation	Chr9	14647024	Chr6	28280471	LOC_Os06g46580
Translocation	Chr11	15982163	Chr8	7146075	2
Translocation	Chr12	18587603	Chr5	2015582	LOC_Os12g30950
Translocation	Chr12	18848707	Chr4	4358506
Translocation	Chr7	19727453	Chr6	30023819	2
Translocation	Chr12	22349211	Chr8	248927
Translocation	Chr7	22455724	Chr5	7557104
Translocation	Chr11	24621638	Chr8	9667766	LOC_Os08g15880
Translocation	Chr4	25756939	Chr3	11224776	LOC_Os03g19950

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