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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15151650	C-T	Homo
SBS	Chr1	16391767	T-C	Homo
SBS	Chr1	28445869	A-G	HET
SBS	Chr10	3774666	C-G	HET	SPLICE_SITE_ACCEPTOR	LOC_Os10g07190
SBS	Chr10	4940623	T-G	HET
SBS	Chr11	13614985	G-A	HET
SBS	Chr11	14830357	T-A	HET
SBS	Chr11	15306146	T-A	HET
SBS	Chr11	16099537	T-A	HET
SBS	Chr11	16844691	C-G	HET
SBS	Chr11	16844695	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29074
SBS	Chr11	18308011	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31370
SBS	Chr2	23634852	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g39130
SBS	Chr2	27021959	A-T	Homo
SBS	Chr2	28102564	G-A	HET
SBS	Chr2	29436800	G-A	HET
SBS	Chr2	31285544	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g51130
SBS	Chr2	31525235	C-T	HET
SBS	Chr3	19014167	A-G	HET
SBS	Chr3	5950634	G-A	HET
SBS	Chr3	8082029	T-A	HET
SBS	Chr4	16756460	C-G	HET	STOP_GAINED	LOC_Os04g28300
SBS	Chr4	26561864	T-A	HET
SBS	Chr4	28134601	A-T	HET
SBS	Chr4	5236099	G-A	Homo
SBS	Chr6	20542814	C-T	HET
SBS	Chr7	16344697	T-A	HET
SBS	Chr7	16344701	A-G	HET
SBS	Chr7	23384307	A-G	HET
SBS	Chr7	26079731	G-A	HET
SBS	Chr8	11180215	C-A	HET
SBS	Chr8	22283208	G-A	Homo
SBS	Chr8	6311047	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10710
SBS	Chr9	12835928	A-T	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	7249075	7249080	5
Deletion	Chr7	7500286	7500287	1	LOC_Os07g13090
Deletion	Chr4	8637255	8637275	20
Deletion	Chr8	9383727	9383740	13	LOC_Os08g15420
Deletion	Chr9	9654463	9654472	9
Deletion	Chr11	10374206	10374211	5
Deletion	Chr8	13631941	13631946	5
Deletion	Chr12	20296018	20296069	51
Deletion	Chr2	20859222	20859223	1	LOC_Os02g34790
Deletion	Chr10	22929933	22929934	1
Deletion	Chr12	22965792	22965796	4
Deletion	Chr11	23873974	23873976	2
Deletion	Chr8	25565835	25565838	3
Deletion	Chr3	26936494	26936502	8	LOC_Os03g47590
Deletion	Chr11	27482145	27482149	4
Deletion	Chr2	33836557	33836560	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11769545	11769605	61
Insertion	Chr2	23010572	23010573	2
Insertion	Chr4	19068792	19068792	1	LOC_Os04g31850
Insertion	Chr6	16047137	16047418	282
Insertion	Chr8	16899200	16899205	6

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr1	17593292	17782647
Inversion	Chr1	17929755	18116327
Inversion	Chr3	26538240	26593953
Inversion	Chr3	26538257	26593956

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8225692	Chr4	2101346
Translocation	Chr10	10311897	Chr4	5525974
Translocation	Chr9	12548864	Chr7	23798420	2
Translocation	Chr9	12582336	Chr7	23798389	2
Translocation	Chr12	20096547	Chr6	23394909
Translocation	Chr5	28456940	Chr4	28832653	LOC_Os05g49600
Translocation	Chr5	28457379	Chr4	28748158	LOC_Os05g49600

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