Search Nipponbare

Mutant Information

Mutant Name	FN4379-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4379-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 52

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11862109	T-C	HET	INTERGENIC
SBS	Chr1	14990110	C-T	HET	INTERGENIC
SBS	Chr1	21207741	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g37880
SBS	Chr1	23833475	T-A	HOMO	INTERGENIC
SBS	Chr1	24352377	C-T	HOMO	INTRON
SBS	Chr1	24412430	C-T	HOMO	INTERGENIC
SBS	Chr1	29838641	T-G	HET	INTERGENIC
SBS	Chr1	3426376	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g07260
SBS	Chr1	4846801	G-A	HET	INTERGENIC
SBS	Chr10	17662621	G-A	HET	INTERGENIC
SBS	Chr11	1763443	T-C	HOMO	INTERGENIC
SBS	Chr11	23074103	G-C	HET	INTERGENIC
SBS	Chr11	6046287	G-A	HOMO	INTERGENIC
SBS	Chr12	18162288	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	5338854	C-G	HET	INTERGENIC
SBS	Chr12	8917839	G-C	HET	INTERGENIC
SBS	Chr12	9783419	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	12328103	G-A	HET	INTERGENIC
SBS	Chr2	13410177	A-G	HOMO	INTERGENIC
SBS	Chr2	26347220	C-A	HET	INTERGENIC
SBS	Chr2	31372794	C-T	HOMO	INTERGENIC
SBS	Chr2	4720299	T-A	HOMO	UTR_3_PRIME
SBS	Chr2	7604950	C-T	HOMO	INTERGENIC
SBS	Chr2	8902905	G-A	HOMO	INTERGENIC
SBS	Chr3	14314848	G-A	HET	INTERGENIC
SBS	Chr3	15951803	G-A	HET	INTERGENIC
SBS	Chr3	26668096	C-T	HET	INTERGENIC
SBS	Chr3	28775949	T-A	HET	SYNONYMOUS_CODING
SBS	Chr3	30498187	G-A	HOMO	INTERGENIC
SBS	Chr3	32408946	C-A	HOMO	INTERGENIC
SBS	Chr3	8021101	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g14750
SBS	Chr4	20402091	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g33690
SBS	Chr4	28116137	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g47370
SBS	Chr4	5271514	G-T	HET	INTERGENIC
SBS	Chr4	8223179	C-T	HET	INTRON
SBS	Chr5	11561823	T-G	HOMO	INTRON
SBS	Chr5	20051591	G-A	HET	INTERGENIC
SBS	Chr5	22158567	C-G	HET	INTRON
SBS	Chr5	27110779	A-T	HET	INTERGENIC
SBS	Chr5	28923206	T-C	HET	INTERGENIC
SBS	Chr6	29189209	C-T	HET	STOP_GAINED	LOC_Os06g48270
SBS	Chr6	6889995	A-G	HET	INTERGENIC
SBS	Chr7	10398922	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17610
SBS	Chr7	1141870	A-T	HET	UTR_5_PRIME
SBS	Chr7	13197430	A-G	HOMO	INTERGENIC
SBS	Chr7	13197440	G-C	HOMO	INTERGENIC
SBS	Chr7	13197441	C-A	HOMO	INTERGENIC
SBS	Chr7	24153758	C-T	HET	INTERGENIC
SBS	Chr7	7387389	T-A	HOMO	INTERGENIC
SBS	Chr8	2519702	G-T	HET	INTERGENIC
SBS	Chr9	13071766	C-T	HET	INTERGENIC
SBS	Chr9	21597357	A-G	HET	UTR_5_PRIME

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	433511	433518	7
Deletion	Chr7	596001	872000	276000	46
Deletion	Chr4	855526	855530	4
Deletion	Chr7	894001	1047000	153000	29
Deletion	Chr11	1416890	1416891	1	LOC_Os11g03650
Deletion	Chr9	1620993	1620999	6
Deletion	Chr9	1935951	1935952	1
Deletion	Chr8	5952460	5952461	1
Deletion	Chr11	6448380	6448385	5	LOC_Os11g11580
Deletion	Chr3	7770670	7770671	1
Deletion	Chr10	7998568	7998581	13
Deletion	Chr7	8388856	8388858	2
Deletion	Chr9	9895083	9895086	3
Deletion	Chr10	12375549	12375550	1
Deletion	Chr8	14225801	14225816	15	LOC_Os08g23500
Deletion	Chr6	14715096	14715097	1
Deletion	Chr8	15100577	15100578	1
Deletion	Chr6	16307934	16307942	8
Deletion	Chr10	16439459	16439462	3
Deletion	Chr11	16809509	16809572	63
Deletion	Chr2	19417001	19545000	128000	20
Deletion	Chr2	19805341	19805342	1
Deletion	Chr1	21772356	21772374	18
Deletion	Chr7	22054665	22054667	2
Deletion	Chr1	25107775	25107787	12	LOC_Os01g43820
Deletion	Chr2	26688620	26688623	3
Deletion	Chr7	27522268	27522270	2
Deletion	Chr5	27829995	27829997	2
Deletion	Chr4	28508550	28508555	5
Deletion	Chr4	29306181	29306197	16
Deletion	Chr2	30593675	30593678	3	LOC_Os02g50100

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	36792087	36792087	1
Insertion	Chr1	43041063	43041063	1
Insertion	Chr11	2521446	2521446	1
Insertion	Chr12	11124669	11124670	2
Insertion	Chr2	9009054	9009062	9
Insertion	Chr2	9088885	9088941	57
Insertion	Chr5	19008640	19008690	51
Insertion	Chr8	18763625	18763628	4
Insertion	Chr8	18790535	18790535	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr9	14863567	15595915
Inversion	Chr12	16716741	16717928
Inversion	Chr2	20495132	20495280
Inversion	Chr4	22769122	22769344

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	20195838	Chr4	56438	LOC_Os04g33350
Translocation	Chr5	27807540	Chr2	3567833	2
Translocation	Chr5	27807546	Chr2	3568296	2

Main menu

You are here

Search Nipponbare