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Mutant Information

Mutant Name	FN4385-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4385-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40081118	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g68990
SBS	Chr10	7454115	T-C	HOMO	INTERGENIC
SBS	Chr10	7454116	G-A	HOMO	INTERGENIC
SBS	Chr10	886537	G-A	HET	INTRON
SBS	Chr11	18839990	C-T	HET	INTERGENIC
SBS	Chr11	4490351	T-G	HET	INTRON
SBS	Chr2	7112434	T-C	HET	INTERGENIC
SBS	Chr2	9121014	C-T	HOMO	INTERGENIC
SBS	Chr3	19267594	C-G	HET	INTERGENIC
SBS	Chr3	2650912	G-A	HET	INTERGENIC
SBS	Chr3	8090849	G-A	HOMO	INTERGENIC
SBS	Chr3	9241677	G-A	HET	INTERGENIC
SBS	Chr4	22188140	C-T	HET	INTERGENIC
SBS	Chr4	24176175	A-T	HET	INTRON
SBS	Chr4	34710949	G-T	HET	INTERGENIC
SBS	Chr6	1302440	A-G	HET	INTERGENIC
SBS	Chr6	6794507	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g12530
SBS	Chr7	21455810	G-C	HET	INTERGENIC
SBS	Chr7	4979728	G-A	HET	INTRON
SBS	Chr9	9215152	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15180

Deletions: 62

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	115342	115343	1
Deletion	Chr8	810433	810434	1
Deletion	Chr4	1543033	1543034	1
Deletion	Chr2	2048721	2048722	1
Deletion	Chr4	2627645	2627646	1
Deletion	Chr4	5057510	5057511	1
Deletion	Chr9	5393001	5495000	102000	13
Deletion	Chr9	5497001	5689000	192000	35
Deletion	Chr9	5690001	5698000	8000	3
Deletion	Chr3	6478535	6478536	1
Deletion	Chr7	7610786	7610789	3
Deletion	Chr10	7673834	7673835	1
Deletion	Chr9	7861671	7861689	18
Deletion	Chr6	8115518	8115519	1
Deletion	Chr12	8513043	8513048	5
Deletion	Chr7	9075758	9075760	2
Deletion	Chr2	9093510	9093511	1
Deletion	Chr6	9376695	9376696	1
Deletion	Chr7	9561171	9561172	1
Deletion	Chr5	9940011	9940012	1
Deletion	Chr7	10659682	10659713	31
Deletion	Chr4	10720330	10720331	1	LOC_Os04g19270
Deletion	Chr2	10952436	10952444	8
Deletion	Chr8	12156104	12156105	1	LOC_Os08g20250
Deletion	Chr7	12229819	12229820	1
Deletion	Chr7	13263218	13263219	1	LOC_Os07g23480
Deletion	Chr8	13728126	13728127	1
Deletion	Chr8	13806042	13806043	1
Deletion	Chr2	13962066	13962067	1
Deletion	Chr5	15188225	15188226	1
Deletion	Chr6	15437108	15437262	154
Deletion	Chr12	15683807	15683808	1
Deletion	Chr7	15684385	15684386	1
Deletion	Chr11	15924884	15924888	4
Deletion	Chr11	16629562	16629563	1
Deletion	Chr5	16756747	16756748	1
Deletion	Chr12	17220852	17220901	49	LOC_Os12g29070
Deletion	Chr10	17448193	17448194	1
Deletion	Chr8	17916115	17916116	1
Deletion	Chr9	18935128	18935129	1
Deletion	Chr9	19959254	19959255	1
Deletion	Chr8	20002580	20002581	1
Deletion	Chr1	20070469	20070482	13	LOC_Os01g36250
Deletion	Chr2	20174360	20174361	1
Deletion	Chr1	20426216	20426217	1
Deletion	Chr12	20449638	20449639	1
Deletion	Chr12	20726635	20726655	20
Deletion	Chr4	20895875	20895876	1
Deletion	Chr7	21968187	21968279	92
Deletion	Chr3	22936506	22936507	1
Deletion	Chr2	24446129	24446218	89	LOC_Os02g40360
Deletion	Chr7	26114640	26114708	68
Deletion	Chr11	26542450	26542451	1
Deletion	Chr7	27229894	27229896	2
Deletion	Chr5	28689047	28689049	2
Deletion	Chr4	28786531	28786532	1
Deletion	Chr6	29242595	29242596	1
Deletion	Chr5	29275686	29275687	1
Deletion	Chr4	30038112	30038113	1
Deletion	Chr2	34091096	34091097	1
Deletion	Chr1	34172818	34172819	1
Deletion	Chr1	36846273	36846344	71

Insertions: 46

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12434839	12434840	2
Insertion	Chr1	12479643	12479644	2
Insertion	Chr1	28505451	28505452	2
Insertion	Chr1	35696825	35696825	1
Insertion	Chr1	6653088	6653088	1
Insertion	Chr10	15066809	15066809	1
Insertion	Chr10	20502381	20502382	2
Insertion	Chr10	21685681	21685682	2
Insertion	Chr10	5411261	5411261	1
Insertion	Chr10	7072025	7072025	1
Insertion	Chr11	5292125	5292126	2
Insertion	Chr11	8452393	8452393	1
Insertion	Chr12	11626172	11626178	7
Insertion	Chr12	15945634	15945634	1
Insertion	Chr12	16030037	16030055	19
Insertion	Chr12	21379526	21379526	1
Insertion	Chr12	7770793	7770797	5
Insertion	Chr12	7952340	7952340	1
Insertion	Chr2	20440560	20440561	2
Insertion	Chr2	3479162	3479162	1
Insertion	Chr2	4362087	4362089	3
Insertion	Chr3	10165793	10165793	1
Insertion	Chr3	28802408	28802409	2
Insertion	Chr3	30250293	30250293	1
Insertion	Chr3	32583603	32583606	4
Insertion	Chr3	873389	873389	1
Insertion	Chr4	12032401	12032401	1
Insertion	Chr4	22706203	22706205	3
Insertion	Chr4	4953974	4953974	1
Insertion	Chr4	8749036	8749036	1
Insertion	Chr4	9181466	9181467	2
Insertion	Chr5	22567824	22567824	1
Insertion	Chr5	2697098	2697099	2
Insertion	Chr5	5301174	5301174	1
Insertion	Chr6	10353963	10353963	1
Insertion	Chr6	25171714	25171714	1
Insertion	Chr7	1522237	1522241	5
Insertion	Chr7	21336915	21336916	2
Insertion	Chr7	27558942	27558942	1
Insertion	Chr7	5931784	5931784	1
Insertion	Chr8	7267630	7267630	1
Insertion	Chr9	13546853	13546853	1
Insertion	Chr9	3260785	3260785	1
Insertion	Chr9	5234340	5234340	1
Insertion	Chr9	7334089	7334091	3
Insertion	Chr9	8244705	8244707	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1234896	1235037
Inversion	Chr9	12388593	12388802

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	752451	Chr3	15249003	LOC_Os03g02240
Translocation	Chr6	2403847	Chr1	25613435
Translocation	Chr7	13468576	Chr2	24765616
Translocation	Chr8	23122611	Chr2	35370970
Translocation	Chr2	34172624	Chr1	31363327

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