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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12153220	A-G	HOMO	INTERGENIC
SBS	Chr1	29109254	T-A	HOMO	INTERGENIC
SBS	Chr2	4029380	G-T	HOMO	INTERGENIC
SBS	Chr2	15183357	C-T	HET	INTERGENIC
SBS	Chr3	19760188	A-G	HET	INTERGENIC
SBS	Chr3	22624599	C-T	HOMO	INTRON
SBS	Chr4	1159447	T-C	HOMO	INTERGENIC
SBS	Chr4	2600052	G-A	HET	INTERGENIC
SBS	Chr4	13152160	G-C	HET	INTERGENIC
SBS	Chr4	13926456	G-A	HET	INTERGENIC
SBS	Chr4	15860660	A-G	HET	INTERGENIC
SBS	Chr4	16020667	A-T	HET	INTERGENIC
SBS	Chr4	32651657	G-A	HOMO	INTRON
SBS	Chr4	34462365	G-T	HET	INTRON
SBS	Chr5	25142173	G-A	HET	INTERGENIC
SBS	Chr6	5269557	A-G	HET	INTERGENIC
SBS	Chr6	8491185	G-A	HET	INTERGENIC
SBS	Chr6	21593473	G-C	HET	INTERGENIC
SBS	Chr7	2575926	T-A	HOMO	INTERGENIC
SBS	Chr7	21319753	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35610
SBS	Chr7	23208418	A-G	HET	INTERGENIC
SBS	Chr7	26760017	G-A	HET	INTERGENIC
SBS	Chr8	74828	C-T	HET	INTERGENIC
SBS	Chr8	3832004	C-G	HET	INTERGENIC
SBS	Chr8	9304202	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g15300
SBS	Chr9	2543663	G-A	HET	INTERGENIC
SBS	Chr9	6856390	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g12130
SBS	Chr9	13343111	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g22030
SBS	Chr9	17760291	G-A	HOMO	INTRON
SBS	Chr10	4892035	C-A	HET	INTERGENIC
SBS	Chr10	7002164	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g12570
SBS	Chr10	14788850	A-G	HET	INTERGENIC
SBS	Chr10	22905633	G-T	HET	INTERGENIC
SBS	Chr11	2151000	G-T	HET	INTERGENIC
SBS	Chr11	9054147	G-T	HET	INTERGENIC
SBS	Chr11	15529924	A-G	HET	INTERGENIC
SBS	Chr11	20536632	T-C	HET	INTRON
SBS	Chr12	17187849	G-A	HET	INTERGENIC
SBS	Chr12	19943028	G-A	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	327001	384000	57000	12
Deletion	Chr12	455001	752000	297000	60
Deletion	Chr12	754001	1341000	587000	104
Deletion	Chr12	1115854	1115855	1
Deletion	Chr8	1177546	1177547	1
Deletion	Chr12	1343001	1533000	190000	30
Deletion	Chr4	1937797	1937798	1
Deletion	Chr5	1982539	1982591	52
Deletion	Chr3	2106762	2106763	1
Deletion	Chr5	2352114	2352126	12	LOC_Os05g04890
Deletion	Chr8	3658804	3658805	1
Deletion	Chr3	4962666	4962668	2
Deletion	Chr10	5305299	5305300	1	LOC_Os10g09810
Deletion	Chr1	6284654	6284660	6
Deletion	Chr10	6988136	6988137	1
Deletion	Chr9	7804136	7804137	1
Deletion	Chr10	10274083	10274084	1	LOC_Os10g20430
Deletion	Chr12	10666628	10666629	1
Deletion	Chr4	12941660	12941661	1
Deletion	Chr4	13641001	13716000	75000	9
Deletion	Chr9	14037784	14037785	1
Deletion	Chr4	14126001	14140000	14000	4
Deletion	Chr10	15179631	15179632	1
Deletion	Chr11	15828353	15828388	35
Deletion	Chr1	17907722	17907723	1
Deletion	Chr8	17973215	17973216	1	LOC_Os08g29290
Deletion	Chr6	18388060	18388061	1
Deletion	Chr11	18956119	18956120	1
Deletion	Chr1	19559640	19559641	1
Deletion	Chr7	23255401	23255403	2
Deletion	Chr1	24797929	24797930	1
Deletion	Chr3	27795430	27795529	99
Deletion	Chr1	27971063	27971066	3

Insertions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	22449270	22449272	3
Insertion	Chr9	4050758	4050758	1
Insertion	Chr12	2366154	2366157	4
Insertion	Chr1	4878389	4878389	1
Insertion	Chr2	21354267	21354302	36	LOC_Os02g35520
Insertion	Chr4	10059423	10059423	1
Insertion	Chr4	13537384	13537384	1
Insertion	Chr4	26235505	26235505	1
Insertion	Chr5	2017252	2017252	1
Insertion	Chr6	27133769	27133771	3
Insertion	Chr6	31218713	31218713	1
Insertion	Chr7	2984724	2984724	1
Insertion	Chr7	10775343	10775345	3
Insertion	Chr7	16690623	16690623	1
Insertion	Chr7	21652325	21652325	1
Insertion	Chr8	8848460	8848460	1
Insertion	Chr9	15451265	15451265	1
Insertion	Chr10	8744076	8744076	1
Insertion	Chr11	12101869	12101921	53
Insertion	Chr12	696920	696920	1
Insertion	Chr12	2880758	2880758	1
Insertion	Chr12	8264472	8264474	3
Insertion	Chr12	10312879	10312879	1
Insertion	Chr12	12946631	12946631	1
Insertion	Chr12	18244214	18244214	1	LOC_Os12g30400

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	722231	1493162	LOC_Os06g03770
Inversion	Chr6	805369	1493185	LOC_Os06g03770
Inversion	Chr1	31774864	32528723

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10044313	Chr7	15104053	LOC_Os09g16430
Translocation	Chr10	11399655	Chr1	16252173
Translocation	Chr4	14191052	Chr1	30334974	LOC_Os04g24730

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