Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10660501	A-G	HET	INTERGENIC
SBS	Chr1	11381567	G-A	HET	INTERGENIC
SBS	Chr1	18242628	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g33136
SBS	Chr1	2907830	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g06090
SBS	Chr1	35078237	A-T	HOMO	INTERGENIC
SBS	Chr1	35337256	C-T	HOMO	INTERGENIC
SBS	Chr1	37117862	T-C	HET	INTERGENIC
SBS	Chr1	9152491	C-T	HET	INTERGENIC
SBS	Chr1	9621474	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	258234	G-C	HET	INTERGENIC
SBS	Chr10	3223216	A-G	HET	INTERGENIC
SBS	Chr10	4539739	G-A	HET	INTERGENIC
SBS	Chr10	5894510	C-T	HET	INTERGENIC
SBS	Chr10	5895473	G-A	HET	INTERGENIC
SBS	Chr11	14724206	A-G	HOMO	INTERGENIC
SBS	Chr11	26661453	A-T	HOMO	INTERGENIC
SBS	Chr11	26661968	T-A	HET	INTERGENIC
SBS	Chr12	23695918	A-G	HET	INTERGENIC
SBS	Chr12	264216	T-A	HET	INTRON
SBS	Chr12	264217	A-T	HET	INTRON
SBS	Chr2	1877804	G-A	HOMO	INTERGENIC
SBS	Chr2	6944353	G-A	HET	INTERGENIC
SBS	Chr2	8224809	G-A	HET	INTERGENIC
SBS	Chr3	10050814	T-A	HOMO	INTERGENIC
SBS	Chr3	16903637	G-C	HOMO	INTERGENIC
SBS	Chr4	7451230	G-T	HET	STOP_GAINED	LOC_Os04g13390
SBS	Chr4	971011	G-A	HET	INTERGENIC
SBS	Chr5	10486626	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18230
SBS	Chr5	2033815	C-T	HET	STOP_GAINED	LOC_Os05g04420
SBS	Chr5	23643688	A-G	HET	INTRON
SBS	Chr5	6386489	G-A	HET	INTERGENIC
SBS	Chr6	24697806	G-A	HET	INTERGENIC
SBS	Chr6	4182398	G-A	HET	INTRON
SBS	Chr7	14100651	C-T	HET	INTERGENIC
SBS	Chr8	18225179	A-T	HOMO	INTERGENIC
SBS	Chr8	21018250	C-A	HET	INTRON
SBS	Chr9	13520472	C-T	HET	STOP_GAINED	LOC_Os09g22370
SBS	Chr9	13520473	C-T	HET	STOP_GAINED	LOC_Os09g22370
SBS	Chr9	20417839	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g35530
SBS	Chr9	3197569	C-T	HET	INTERGENIC
SBS	Chr9	5788775	T-C	HET	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	53848	53850	2
Deletion	Chr4	177028	177029	1
Deletion	Chr2	378200	378201	1	LOC_Os02g01679
Deletion	Chr2	1372183	1372184	1	LOC_Os02g03380
Deletion	Chr9	3029982	3029984	2
Deletion	Chr4	3249864	3249906	42
Deletion	Chr1	6497710	6497719	9
Deletion	Chr10	8107293	8107458	165
Deletion	Chr5	8484487	8484488	1
Deletion	Chr4	9571002	9571003	1
Deletion	Chr1	10726415	10726424	9
Deletion	Chr5	11201519	11201521	2
Deletion	Chr8	12903154	12903158	4
Deletion	Chr1	13562460	13562477	17
Deletion	Chr5	14290558	14290559	1
Deletion	Chr1	14301587	14301588	1
Deletion	Chr6	14987001	15009000	22000	5
Deletion	Chr12	15277102	15277109	7
Deletion	Chr8	15303522	15303523	1
Deletion	Chr12	17446329	17446334	5
Deletion	Chr1	19250313	19250315	2
Deletion	Chr1	19300404	19300417	13	LOC_Os01g34920
Deletion	Chr11	21066953	21066961	8
Deletion	Chr10	22011768	22011861	93
Deletion	Chr5	22103001	22103030	29
Deletion	Chr8	23038996	23038997	1
Deletion	Chr3	23758350	23758351	1
Deletion	Chr3	26132675	26132679	4	LOC_Os03g46220
Deletion	Chr5	26675029	26675035	6
Deletion	Chr11	26802247	26802248	1	LOC_Os11g44340
Deletion	Chr3	29635122	29635159	37

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	27611488	27611488	1
Insertion	Chr11	28878365	28878422	58
Insertion	Chr12	9229235	9229235	1
Insertion	Chr2	23784126	23784127	2
Insertion	Chr4	19293177	19293179	3
Insertion	Chr4	23708642	23708647	6
Insertion	Chr5	17267919	17267919	1
Insertion	Chr6	29270737	29270737	1
Insertion	Chr7	11139930	11140004	75
Insertion	Chr7	13815268	13815271	4
Insertion	Chr8	18644037	18644037	1
Insertion	Chr8	24138366	24138366	1	LOC_Os08g38100

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	20445323	20445404	LOC_Os05g34480

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	29627453	Chr1	5877593	LOC_Os07g49460
Translocation	Chr7	29627457	Chr1	12991771	LOC_Os07g49460

Main menu