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Mutant Information

Mutant Name	FN4393-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4393-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 64

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10678015	C-T	HET	UTR_3_PRIME
SBS	Chr1	10945786	A-C	HET	INTERGENIC
SBS	Chr1	13332186	G-A	HET	INTERGENIC
SBS	Chr1	16462431	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g29370
SBS	Chr1	17038673	G-T	HET	INTRON
SBS	Chr1	32458197	T-A	HET	INTERGENIC
SBS	Chr1	34440691	A-T	HET	STOP_GAINED	LOC_Os01g59560
SBS	Chr1	39039603	T-C	HET	INTERGENIC
SBS	Chr2	38376	T-C	HET	INTRON
SBS	Chr2	8003840	G-A	HET	INTERGENIC
SBS	Chr2	13814610	A-G	HET	INTERGENIC
SBS	Chr2	16027264	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	16807364	C-T	HET	INTERGENIC
SBS	Chr2	16902078	A-T	HET	INTERGENIC
SBS	Chr2	30771955	G-A	HET	INTERGENIC
SBS	Chr2	32476208	C-T	HET	INTERGENIC
SBS	Chr2	34258526	C-A	HET	SPLICE_SITE_REGION
SBS	Chr2	34768141	G-C	HOMO	INTERGENIC
SBS	Chr3	5705757	A-T	HOMO	INTERGENIC
SBS	Chr3	5715417	G-A	HOMO	INTERGENIC
SBS	Chr3	10308797	T-A	HOMO	INTERGENIC
SBS	Chr3	27393998	A-T	HET	INTERGENIC
SBS	Chr3	27529037	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g48350
SBS	Chr3	31895584	T-G	HET	INTRON
SBS	Chr4	702683	G-A	HET	INTERGENIC
SBS	Chr4	10331489	C-A	HET	INTERGENIC
SBS	Chr4	13316803	G-A	HET	INTERGENIC
SBS	Chr4	16725284	C-T	HET	INTERGENIC
SBS	Chr4	17074583	T-C	HET	INTERGENIC
SBS	Chr4	19174135	G-T	HET	INTERGENIC
SBS	Chr4	32914416	G-T	HET	INTERGENIC
SBS	Chr5	6676087	T-A	HOMO	INTRON
SBS	Chr5	14539174	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g25100
SBS	Chr5	22668675	A-G	HET	INTERGENIC
SBS	Chr5	28308988	G-A	HET	INTERGENIC
SBS	Chr6	7811446	C-G	HET	INTERGENIC
SBS	Chr6	7817048	C-T	HET	INTERGENIC
SBS	Chr6	13989584	C-T	HOMO	INTERGENIC
SBS	Chr6	14650687	G-T	HOMO	INTERGENIC
SBS	Chr6	16629384	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	19650498	T-G	HOMO	INTERGENIC
SBS	Chr6	25625736	T-A	HET	INTERGENIC
SBS	Chr7	14403045	C-A	HET	INTERGENIC
SBS	Chr7	22403126	G-A	HET	INTERGENIC
SBS	Chr7	24594964	C-G	HET	INTRON
SBS	Chr8	5944680	G-T	HET	INTRON
SBS	Chr8	13638765	T-C	HOMO	INTRON
SBS	Chr9	2514954	T-A	HET	INTRON
SBS	Chr9	8263178	C-T	HET	INTERGENIC
SBS	Chr9	8390212	C-T	HET	STOP_GAINED	LOC_Os09g14180
SBS	Chr10	3254096	G-C	HET	INTERGENIC
SBS	Chr10	4827129	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08920
SBS	Chr10	11727341	A-T	HOMO	INTERGENIC
SBS	Chr11	3528763	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07080
SBS	Chr11	3552895	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07130
SBS	Chr11	3552896	G-T	HET	SYNONYMOUS_CODING
SBS	Chr11	10285493	G-A	HET	INTERGENIC
SBS	Chr11	11974037	C-T	HET	INTRON
SBS	Chr11	23628834	A-G	HET	INTRON
SBS	Chr12	4152052	C-G	HET	INTERGENIC
SBS	Chr12	4528556	A-G	HET	UTR_5_PRIME
SBS	Chr12	9557381	A-G	HET	INTRON
SBS	Chr12	17683833	G-A	HOMO	INTERGENIC
SBS	Chr12	20440309	G-T	HOMO	INTRON

Deletions: 47

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	72335	72337	2
Deletion	Chr12	344401	344404	3
Deletion	Chr10	663107	663108	1
Deletion	Chr6	1401530	1401531	1
Deletion	Chr12	1663864	1663870	6
Deletion	Chr12	1926561	1926564	3	LOC_Os12g04520
Deletion	Chr5	3119227	3119228	1
Deletion	Chr5	3230909	3230921	12
Deletion	Chr10	3453028	3453080	52
Deletion	Chr6	3758772	3758773	1
Deletion	Chr7	4251107	4251113	6
Deletion	Chr12	5290626	5290627	1
Deletion	Chr4	6024459	6024460	1
Deletion	Chr5	6709486	6709490	4
Deletion	Chr10	7696469	7696482	13	LOC_Os10g14194
Deletion	Chr2	7967599	7967600	1
Deletion	Chr6	8014569	8014570	1
Deletion	Chr11	10132363	10132366	3
Deletion	Chr2	10273294	10273300	6
Deletion	Chr6	10433288	10433292	4
Deletion	Chr5	10667149	10667152	3
Deletion	Chr2	10803958	10803959	1
Deletion	Chr2	10864110	10864114	4
Deletion	Chr8	11206561	11206585	24	LOC_Os08g18770
Deletion	Chr12	11914926	11914929	3
Deletion	Chr1	12668065	12668077	12
Deletion	Chr6	12726001	12766000	40000	4
Deletion	Chr2	13341930	13341931	1
Deletion	Chr8	13530889	13530890	1	LOC_Os08g22420
Deletion	Chr5	13596431	13596437	6
Deletion	Chr2	16899911	16899918	7
Deletion	Chr2	16902060	16902066	6
Deletion	Chr4	19173511	19173518	7
Deletion	Chr10	19318361	19318370	9	LOC_Os10g36140
Deletion	Chr2	19894616	19894619	3
Deletion	Chr8	20753999	20754021	22
Deletion	Chr1	22875964	22875965	1
Deletion	Chr2	24705420	24705421	1
Deletion	Chr1	26675926	26675933	7	LOC_Os01g46780
Deletion	Chr4	27573298	27573299	1
Deletion	Chr2	27753552	27753554	2
Deletion	Chr4	28423559	28423561	2
Deletion	Chr6	29006143	29006220	77
Deletion	Chr1	29840765	29840803	38
Deletion	Chr3	34777052	34777068	16
Deletion	Chr3	36068495	36068496	1
Deletion	Chr1	40686328	40686336	8

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	21110653	21110654	2
Insertion	Chr3	13894370	13894370	1
Insertion	Chr7	695639	695639	1
Insertion	Chr11	9336481	9336481	1
Insertion	Chr11	13213908	13213909	2
Insertion	Chr4	8623757	8623757	1
Insertion	Chr4	24680367	24680385	19
Insertion	Chr5	1800182	1800182	1
Insertion	Chr7	12860301	12860301	1
Insertion	Chr8	9911702	9911705	4
Insertion	Chr8	25048108	25048115	8

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7576235	8463413	LOC_Os01g13540
Inversion	Chr1	7576243	8463420	LOC_Os01g13540
Inversion	Chr4	13315542	13332772
Inversion	Chr4	13315552	13332776
Inversion	Chr6	13371736	13588668	LOC_Os06g23274
Inversion	Chr6	13371781	13588669	LOC_Os06g23274
Inversion	Chr2	18693249	18778549
Inversion	Chr2	18693270	18778566

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	27002006	Chr3	30879797

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