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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10662999	C-T	HOMO	INTERGENIC
SBS	Chr1	15637406	G-A	HET	INTERGENIC
SBS	Chr1	21944288	A-G	HET	UTR_3_PRIME
SBS	Chr1	25427339	C-T	HET	INTERGENIC
SBS	Chr1	26548216	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g46626
SBS	Chr1	33804098	A-G	HET	INTRON
SBS	Chr10	11791873	C-A	HET	INTERGENIC
SBS	Chr10	16882081	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	23648900	C-A	HET	INTERGENIC
SBS	Chr11	3897504	A-T	HET	INTERGENIC
SBS	Chr12	15389665	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	15389667	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26340
SBS	Chr12	21433247	C-G	HOMO	INTRON
SBS	Chr2	10904835	G-A	HET	INTERGENIC
SBS	Chr2	14962313	C-T	HOMO	UTR_3_PRIME
SBS	Chr2	24743571	G-A	HET	INTRON
SBS	Chr2	6168335	T-C	HET	INTERGENIC
SBS	Chr3	22821183	C-G	HET	INTERGENIC
SBS	Chr3	33585325	T-C	HET	INTERGENIC
SBS	Chr4	13696780	C-T	HET	INTERGENIC
SBS	Chr4	14402308	C-T	HET	INTERGENIC
SBS	Chr4	18147836	A-G	HET	INTERGENIC
SBS	Chr5	11520923	C-G	HOMO	INTERGENIC
SBS	Chr6	1013860	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	12662024	C-A	HOMO	INTERGENIC
SBS	Chr6	20142081	A-G	HOMO	INTERGENIC
SBS	Chr6	21655537	T-C	HOMO	INTRON
SBS	Chr6	6327940	T-C	HET	INTERGENIC
SBS	Chr7	7023334	G-C	HET	INTERGENIC
SBS	Chr7	9949458	G-A	HET	STOP_GAINED	LOC_Os07g16910
SBS	Chr8	10523259	A-T	HET	INTERGENIC
SBS	Chr8	6336932	T-C	HET	INTRON

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	714918	714919	1
Deletion	Chr9	2449714	2449715	1
Deletion	Chr8	3004145	3004146	1
Deletion	Chr4	3503148	3503149	1
Deletion	Chr5	3649006	3649012	6
Deletion	Chr5	3661946	3661962	16
Deletion	Chr7	4174071	4174072	1
Deletion	Chr11	4923974	4923976	2
Deletion	Chr10	5081996	5081997	1
Deletion	Chr6	5610574	5610575	1	LOC_Os06g10740
Deletion	Chr8	6443606	6443634	28
Deletion	Chr12	7385920	7385922	2
Deletion	Chr12	7851717	7851721	4
Deletion	Chr12	9106956	9106958	2
Deletion	Chr12	9977351	9977358	7
Deletion	Chr7	10134930	10134932	2
Deletion	Chr2	11186660	11186662	2
Deletion	Chr6	12006873	12006889	16
Deletion	Chr5	14281081	14281084	3
Deletion	Chr6	14715432	14715433	1
Deletion	Chr3	14781870	14781887	17
Deletion	Chr2	15713348	15713351	3
Deletion	Chr8	15888081	15888082	1
Deletion	Chr7	17464001	17464002	1
Deletion	Chr3	17515041	17515042	1
Deletion	Chr12	18996140	18996141	1
Deletion	Chr12	19491864	19491867	3
Deletion	Chr10	20270570	20270579	9
Deletion	Chr11	20495143	20495144	1
Deletion	Chr8	21971791	21971792	1
Deletion	Chr2	23510882	23510883	1
Deletion	Chr6	24458069	24458074	5
Deletion	Chr12	24587178	24587193	15
Deletion	Chr5	25667449	25667459	10	LOC_Os05g44180
Deletion	Chr7	27764606	27764674	68
Deletion	Chr5	29795895	29795899	4
Deletion	Chr6	29797737	29797738	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1314466	1314481	16
Insertion	Chr1	396366	396367	2
Insertion	Chr11	4801321	4801321	1
Insertion	Chr11	9981486	9981486	1
Insertion	Chr3	19577286	19577286	1
Insertion	Chr3	28016786	28016787	2
Insertion	Chr4	26920556	26920636	81	LOC_Os04g45490
Insertion	Chr5	500547	500548	2
Insertion	Chr6	8170442	8170456	15
Insertion	Chr9	20303192	20303192	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	25187034	25352911	LOC_Os05g43290
Inversion	Chr5	25187044	25352921

No Translocation

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