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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39918015	G-T	HOMO	INTERGENIC
SBS	Chr2	35894167	A-G	HET	INTRON
SBS	Chr3	33240708	C-G	HET	INTRON
SBS	Chr3	35256695	T-G	HET	INTRON
SBS	Chr4	68594	G-A	HET	INTERGENIC
SBS	Chr4	8312097	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14790
SBS	Chr4	19902477	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g32940
SBS	Chr5	23275882	T-A	HET	INTRON
SBS	Chr6	7359321	T-A	HET	INTERGENIC
SBS	Chr6	15740870	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g27800
SBS	Chr6	15944304	G-A	HET	INTERGENIC
SBS	Chr6	20045737	C-A	HET	INTERGENIC
SBS	Chr7	1437986	G-C	HET	UTR_3_PRIME
SBS	Chr7	21224128	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35480
SBS	Chr7	26799850	A-G	HET	INTERGENIC
SBS	Chr8	11643873	T-C	HET	INTERGENIC
SBS	Chr8	16535397	T-G	HET	INTERGENIC
SBS	Chr8	17746158	A-T	HET	INTERGENIC
SBS	Chr9	13056653	G-A	HOMO	INTERGENIC
SBS	Chr10	2405286	T-C	HET	INTERGENIC
SBS	Chr10	19634902	C-T	HET	INTERGENIC
SBS	Chr11	20047812	T-A	HOMO	INTRON
SBS	Chr12	17679392	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29640

Deletions: 42

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	48789	48793	4
Deletion	Chr5	4559257	4559270	13
Deletion	Chr1	5005229	5005232	3
Deletion	Chr3	5212426	5212427	1
Deletion	Chr4	5364383	5364384	1
Deletion	Chr1	5466797	5466800	3	LOC_Os01g10380
Deletion	Chr7	7020946	7020956	10
Deletion	Chr9	7137081	7137082	1
Deletion	Chr5	8423437	8423441	4
Deletion	Chr12	9125973	9125987	14
Deletion	Chr5	9822126	9822127	1
Deletion	Chr10	10606844	10606864	20
Deletion	Chr6	11647912	11647913	1
Deletion	Chr2	12166794	12166811	17
Deletion	Chr5	12670703	12670722	19
Deletion	Chr3	13972555	13972556	1
Deletion	Chr11	14554001	14583000	29000	3
Deletion	Chr11	14584001	14836000	252000	37
Deletion	Chr5	14614001	14630000	16000	2
Deletion	Chr5	14631001	14673000	42000	5
Deletion	Chr1	15733230	15733234	4
Deletion	Chr8	17799605	17799610	5	LOC_Os08g29070
Deletion	Chr1	18327972	18327973	1
Deletion	Chr7	20392196	20392202	6
Deletion	Chr3	20647571	20647594	23	LOC_Os03g37250
Deletion	Chr8	21327001	21470000	143000	20
Deletion	Chr9	21403636	21403637	1
Deletion	Chr8	21501001	21529000	28000	4
Deletion	Chr5	21744455	21744456	1
Deletion	Chr7	21893001	21993000	100000	9
Deletion	Chr7	21999001	22081000	82000	15
Deletion	Chr2	22124080	22124082	2	LOC_Os02g36640
Deletion	Chr10	23085457	23085459	2
Deletion	Chr11	25544420	25544421	1	LOC_Os11g42440
Deletion	Chr5	25803553	25803555	2
Deletion	Chr4	27294862	27294863	1
Deletion	Chr5	27370986	27370987	1
Deletion	Chr4	33621001	33644000	23000	6
Deletion	Chr2	33987019	33987039	20
Deletion	Chr2	34707384	34707401	17
Deletion	Chr1	38593510	38593522	12
Deletion	Chr1	40579426	40579502	76

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	21490349	21490349	1
Insertion	Chr7	8445864	8445864	1
Insertion	Chr10	1276514	1276514	1
Insertion	Chr2	25918777	25918777	1
Insertion	Chr4	13911779	13911779	1
Insertion	Chr4	20974079	20974084	6
Insertion	Chr5	10082770	10082770	1
Insertion	Chr6	19978990	19978990	1
Insertion	Chr8	11170988	11170988	1
Insertion	Chr8	11179098	11179098	1
Insertion	Chr11	8110196	8110196	1
Insertion	Chr11	17887434	17887441	8
Insertion	Chr11	27010692	27010692	1
Insertion	Chr12	20953053	20953110	58

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr11	9012917	9025117
Inversion	Chr11	9012922	9025119
Inversion	Chr7	11126842	11126988

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	14356079	Chr9	19062296	LOC_Os11g25190

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