Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN440-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN440-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7388955 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 12516075 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 6502013 | G-C | HOMO | INTRON | |
| SBS | Chr11 | 2676687 | C-G | HET | INTERGENIC | |
| SBS | Chr12 | 13339089 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 16865744 | G-C | HET | INTERGENIC | |
| SBS | Chr2 | 2483561 | T-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 4345924 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 34302076 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 34302079 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 13564858 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 19310891 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 7725351 | C-T | HET | INTRON | |
| SBS | Chr5 | 15211363 | G-T | HET | INTRON | |
| SBS | Chr5 | 818597 | A-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 9679525 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 12524160 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 25334967 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g42200 |
| SBS | Chr7 | 11832100 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g20490 |
| SBS | Chr7 | 23995263 | T-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 24982855 | C-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 27218674 | T-C | HET | INTRON | |
| SBS | Chr7 | 27218822 | A-G | HOMO | INTRON | |
| SBS | Chr8 | 22864186 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 16905094 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 2967118 | A-G | HOMO | INTRON |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 8878001 | 9049000 | 171000 | 29 |
| Deletion | Chr7 | 10328879 | 10328886 | 7 | LOC_Os07g17490 |
| Deletion | Chr6 | 12022647 | 12022664 | 17 | |
| Deletion | Chr5 | 12334387 | 12341514 | 7127 | LOC_Os05g20970 |
| Deletion | Chr1 | 12831002 | 12831005 | 3 | |
| Deletion | Chr10 | 13651342 | 13651352 | 10 | |
| Deletion | Chr9 | 14553353 | 14553354 | 1 | |
| Deletion | Chr9 | 18569513 | 18569514 | 1 | LOC_Os09g30474 |
| Deletion | Chr7 | 19455131 | 19455138 | 7 | LOC_Os07g32620 |
| Deletion | Chr10 | 21799171 | 21799174 | 3 | LOC_Os10g40640 |
| Deletion | Chr8 | 22367222 | 22367228 | 6 | |
| Deletion | Chr3 | 24587325 | 24587326 | 1 | |
| Deletion | Chr5 | 24615409 | 24615412 | 3 | |
| Deletion | Chr1 | 24630050 | 24631685 | 1635 | LOC_Os01g43160 |
| Deletion | Chr4 | 32017904 | 32017908 | 4 | LOC_Os04g53730 |
| Deletion | Chr3 | 32762001 | 32774000 | 12000 | 2 |
| Deletion | Chr2 | 33295822 | 33295824 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 42712332 | 42712332 | 1 | |
| Insertion | Chr7 | 24313236 | 24313237 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 8877551 | 9128018 | LOC_Os05g15710 |
| Inversion | Chr5 | 9048930 | 9128039 | |
| Inversion | Chr11 | 19260296 | 19290412 | LOC_Os11g32660 |
| Inversion | Chr11 | 19260307 | 19290415 | LOC_Os11g32660 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 6241183 | Chr3 | 31257961 | LOC_Os03g54980 |
| Translocation | Chr11 | 6964439 | Chr6 | 8927029 | 2 |