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Mutant Information

Mutant Name	FN4405-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4405-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5213622	G-A	HOMO	INTERGENIC
SBS	Chr1	22045649	C-T	HOMO	INTERGENIC
SBS	Chr1	26963525	G-A	HET	STOP_GAINED	LOC_Os01g47170
SBS	Chr1	31793625	C-G	HET	INTERGENIC
SBS	Chr1	32097511	T-A	HET	INTRON
SBS	Chr1	35556551	T-A	HET	INTERGENIC
SBS	Chr1	38121089	A-T	HOMO	INTERGENIC
SBS	Chr1	40684332	A-G	HET	INTERGENIC
SBS	Chr2	10835296	C-T	HET	INTERGENIC
SBS	Chr2	10835298	C-T	HET	INTERGENIC
SBS	Chr2	14153795	T-C	HET	INTERGENIC
SBS	Chr2	24968914	G-A	HET	INTERGENIC
SBS	Chr3	7677076	T-C	HOMO	UTR_5_PRIME
SBS	Chr3	14371092	T-C	HET	INTERGENIC
SBS	Chr3	22826219	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g41070
SBS	Chr3	23997617	C-T	HET	INTERGENIC
SBS	Chr3	24505830	C-T	HOMO	INTERGENIC
SBS	Chr3	36251740	T-C	HET	INTRON
SBS	Chr4	10305428	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	10305429	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18640
SBS	Chr4	19291667	C-T	HET	INTRON
SBS	Chr4	19748827	G-A	HET	INTRON
SBS	Chr4	31515190	C-A	HOMO	INTERGENIC
SBS	Chr4	34449109	T-C	HET	INTERGENIC
SBS	Chr5	9911059	C-T	HET	INTERGENIC
SBS	Chr5	15370221	C-T	HET	INTERGENIC
SBS	Chr5	18486165	G-A	HET	INTERGENIC
SBS	Chr5	21536851	C-T	HET	INTRON
SBS	Chr6	10398621	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g17910
SBS	Chr6	16883964	G-C	HET	INTERGENIC
SBS	Chr7	17584727	T-A	HET	INTERGENIC
SBS	Chr7	24063811	G-T	HOMO	INTERGENIC
SBS	Chr7	25442140	C-T	HOMO	INTRON
SBS	Chr7	25442141	C-T	HOMO	INTRON
SBS	Chr8	13850808	A-G	HET	INTERGENIC
SBS	Chr8	28419710	C-T	HOMO	INTERGENIC
SBS	Chr9	4258507	G-A	HET	INTERGENIC
SBS	Chr9	5645227	C-G	HET	SYNONYMOUS_CODING
SBS	Chr10	8331442	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g16720
SBS	Chr10	17684781	G-A	HET	INTRON
SBS	Chr11	9295729	C-T	HOMO	INTERGENIC
SBS	Chr11	9295730	A-T	HOMO	INTERGENIC
SBS	Chr11	21758936	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g36880
SBS	Chr12	763826	A-G	HET	UTR_5_PRIME

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	133001	162000	29000	4
Deletion	Chr4	472483	472487	4	LOC_Os04g01710
Deletion	Chr5	2349886	2349891	5
Deletion	Chr9	2373010	2373011	1
Deletion	Chr7	3046169	3046180	11
Deletion	Chr12	3253054	3253064	10	LOC_Os12g06680
Deletion	Chr10	4560409	4560410	1
Deletion	Chr4	4775112	4775123	11
Deletion	Chr12	5143001	5171000	28000	2
Deletion	Chr5	5936905	5936906	1
Deletion	Chr1	6454154	6454157	3
Deletion	Chr4	8135675	8135678	3
Deletion	Chr9	9848752	9848760	8
Deletion	Chr5	10597715	10597717	2
Deletion	Chr10	15624044	15624053	9	LOC_Os10g30080
Deletion	Chr7	17804335	17804336	1
Deletion	Chr11	18672532	18672535	3
Deletion	Chr1	20401969	20401985	16
Deletion	Chr8	22422706	22422707	1
Deletion	Chr1	23620500	23620567	67
Deletion	Chr3	23876614	23876623	9
Deletion	Chr7	25631696	25631699	3
Deletion	Chr6	25663260	25663265	5
Deletion	Chr3	27118963	27118965	2
Deletion	Chr4	28826001	28869000	43000	5
Deletion	Chr2	31922863	31922864	1
Deletion	Chr4	32588588	32588597	9
Deletion	Chr3	33538764	33538770	6	LOC_Os03g58910
Deletion	Chr3	33615001	33631000	16000	3

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	5636488	5636488	1
Insertion	Chr7	21633553	21633553	1
Insertion	Chr10	22659914	22659915	2
Insertion	Chr7	9981329	9981342	14
Insertion	Chr7	20663169	20663169	1	LOC_Os07g34460
Insertion	Chr9	18313692	18313703	12
Insertion	Chr11	159877	159913	37

Inversions: 11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3136781	3136880
Inversion	Chr12	6994632	7015054
Inversion	Chr6	14787878	14788038
Inversion	Chr11	14788412	14788652
Inversion	Chr5	23222477	23222586
Inversion	Chr6	24192791	24503176	LOC_Os06g41030
Inversion	Chr6	24192803	24503185	LOC_Os06g41030
Inversion	Chr11	27711872	27712104
Inversion	Chr5	28196703	28196837
Inversion	Chr2	30677010	31543800
Inversion	Chr2	30686467	31543822

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	166703	Chr2	15134549
Translocation	Chr4	28827023	Chr2	15134547	LOC_Os02g47230
Translocation	Chr4	28868945	Chr2	15134159	LOC_Os04g48390

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