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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13022362	C-T	HET	INTERGENIC
SBS	Chr1	3327788	A-T	HET	UTR_3_PRIME
SBS	Chr1	35543820	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61460
SBS	Chr10	10699091	G-A	HET	INTERGENIC
SBS	Chr10	15932681	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g30610
SBS	Chr10	3901766	G-A	HET	INTERGENIC
SBS	Chr10	5838816	A-G	HET	INTERGENIC
SBS	Chr10	6256527	G-A	HET	INTERGENIC
SBS	Chr10	9070801	C-T	HET	INTERGENIC
SBS	Chr11	14480752	G-A	HOMO	INTRON
SBS	Chr11	17327854	A-T	HOMO	INTERGENIC
SBS	Chr12	18225025	G-T	HET	SYNONYMOUS_CODING
SBS	Chr12	25840229	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g41720
SBS	Chr12	4156527	G-A	HET	INTERGENIC
SBS	Chr2	10199560	T-A	HOMO	INTRON
SBS	Chr2	24737607	A-G	HET	INTRON
SBS	Chr2	32108903	C-T	HET	INTERGENIC
SBS	Chr3	16667089	C-A	HET	INTERGENIC
SBS	Chr3	1838424	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr4	15325223	C-A	HOMO	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	19045630	C-T	HET	INTRON
SBS	Chr4	21132366	G-A	HET	INTRON
SBS	Chr4	28232076	T-C	HET	INTRON
SBS	Chr6	11601996	A-G	HET	INTERGENIC
SBS	Chr6	20211010	G-A	HET	INTERGENIC
SBS	Chr6	22692693	C-A	HET	INTERGENIC
SBS	Chr6	25778143	G-A	HOMO	INTERGENIC
SBS	Chr6	6465980	T-G	HOMO	INTRON
SBS	Chr7	18462803	T-C	HET	INTERGENIC
SBS	Chr7	18745419	G-T	HOMO	INTERGENIC
SBS	Chr7	26040275	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g43530
SBS	Chr7	29033493	G-A	HOMO	INTERGENIC
SBS	Chr7	29033494	A-T	HOMO	INTERGENIC
SBS	Chr8	13339704	A-G	HET	INTERGENIC
SBS	Chr8	1950348	T-C	HOMO	INTERGENIC
SBS	Chr9	22595468	T-C	HET	INTRON
SBS	Chr9	2504686	A-G	HOMO	INTERGENIC

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2608001	2618000	10000	LOC_Os11g05700
Deletion	Chr11	2623001	2633000	10000	3
Deletion	Chr8	2699850	2699851	1
Deletion	Chr5	3350122	3350123	1
Deletion	Chr9	3443168	3443169	1	LOC_Os09g07090
Deletion	Chr5	4419569	4419570	1
Deletion	Chr12	4624099	4624101	2
Deletion	Chr3	4729866	4729921	55
Deletion	Chr2	4883156	4883157	1
Deletion	Chr8	5045955	5045962	7
Deletion	Chr1	7146495	7146496	1
Deletion	Chr4	7538302	7538313	11
Deletion	Chr7	7974001	8014000	40000	10
Deletion	Chr6	8644940	8644961	21
Deletion	Chr7	9728974	9728993	19
Deletion	Chr10	9983433	9983434	1
Deletion	Chr9	10376785	10376787	2
Deletion	Chr4	11009132	11009133	1
Deletion	Chr7	12176321	12176322	1
Deletion	Chr8	15064310	15064349	39	LOC_Os08g24880
Deletion	Chr7	17016851	17016877	26
Deletion	Chr9	17787968	17787972	4
Deletion	Chr7	19132261	19132262	1
Deletion	Chr2	20156928	20156929	1
Deletion	Chr2	20972656	20972658	2
Deletion	Chr1	21619219	21619228	9
Deletion	Chr12	22891456	22891457	1
Deletion	Chr8	24766119	24766120	1
Deletion	Chr1	25807251	25807252	1
Deletion	Chr8	26704437	26704439	2
Deletion	Chr4	28235348	28235349	1
Deletion	Chr1	29686007	29686008	1	LOC_Os01g51650
Deletion	Chr1	30814001	31187000	373000	55
Deletion	Chr1	31195001	31365000	170000	32
Deletion	Chr1	31247855	31247857	2
Deletion	Chr1	31367001	31642000	275000	48
Deletion	Chr3	34069996	34069997	1
Deletion	Chr1	34925376	34925379	3	LOC_Os01g60380

Insertions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20981964	20981964	1
Insertion	Chr1	25044988	25044988	1
Insertion	Chr1	2956577	2956619	43
Insertion	Chr1	8959287	8959292	6
Insertion	Chr10	21689157	21689158	2
Insertion	Chr10	22719832	22719847	16
Insertion	Chr10	4059034	4059047	14
Insertion	Chr11	20630907	20630907	1
Insertion	Chr11	22812508	22812510	3
Insertion	Chr12	27324111	27324111	1
Insertion	Chr2	11546562	11546565	4
Insertion	Chr3	15789344	15789345	2
Insertion	Chr3	19759561	19759561	1
Insertion	Chr3	34698635	34698636	2
Insertion	Chr4	29986072	29986073	2
Insertion	Chr4	6468109	6468109	1
Insertion	Chr5	24126885	24126885	1
Insertion	Chr5	28175193	28175194	2
Insertion	Chr5	5661449	5661449	1
Insertion	Chr6	13932392	13932392	1
Insertion	Chr6	15168862	15168872	11
Insertion	Chr7	2044279	2044280	2
Insertion	Chr7	26578145	26578147	3
Insertion	Chr7	420819	420819	1
Insertion	Chr8	13012161	13012161	1	LOC_Os08g21710
Insertion	Chr8	16832934	16832935	2
Insertion	Chr8	27575386	27575389	4
Insertion	Chr8	6219522	6219522	1
Insertion	Chr9	13367940	13367941	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3172424	3172526
Inversion	Chr1	10687574	10687778
Inversion	Chr12	18912949	18913111	LOC_Os12g31440
Inversion	Chr1	26082777	26083061
Inversion	Chr1	30748895	30775583	LOC_Os01g53550

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	24310583	Chr1	30813677	LOC_Os05g41510
Translocation	Chr5	24310599	Chr1	30775591	LOC_Os05g41510
Translocation	Chr2	33210455	Chr1	15782035
Translocation	Chr2	33210461	Chr1	15781607

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