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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	143793	G-A	HET	INTRON
SBS	Chr1	23996415	T-C	HOMO	INTERGENIC
SBS	Chr10	11040736	C-A	HET	INTERGENIC
SBS	Chr10	16142228	C-T	HOMO	INTRON
SBS	Chr10	16565287	G-A	HOMO	INTRON
SBS	Chr10	21816941	G-A	HOMO	INTERGENIC
SBS	Chr10	23030699	A-T	HOMO	INTRON
SBS	Chr11	7459160	T-A	HOMO	INTERGENIC
SBS	Chr12	14969232	T-A	HOMO	INTERGENIC
SBS	Chr12	17170756	C-G	HET	INTRON
SBS	Chr12	8251455	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g14460
SBS	Chr3	18103903	T-A	HET	INTERGENIC
SBS	Chr3	20097015	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36239
SBS	Chr3	3141526	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06260
SBS	Chr3	4459750	G-T	HET	INTERGENIC
SBS	Chr3	4862909	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g09310
SBS	Chr4	20283628	C-T	HOMO	UTR_3_PRIME
SBS	Chr4	29092542	A-T	HOMO	INTRON
SBS	Chr5	2237367	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g04730
SBS	Chr7	10484596	G-T	HET	INTERGENIC
SBS	Chr7	7448479	G-A	HOMO	INTRON
SBS	Chr8	12687786	G-A	HET	INTRON
SBS	Chr9	16680725	G-A	HET	INTERGENIC
SBS	Chr9	16950208	G-A	HET	INTRON

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1109952	1109957	5
Deletion	Chr4	1823001	1840000	17000	LOC_Os04g03990
Deletion	Chr12	5020286	5020287	1
Deletion	Chr9	5030529	5030606	77
Deletion	Chr4	5289001	5345000	56000	8
Deletion	Chr8	6324894	6324896	2
Deletion	Chr7	6625206	6625207	1
Deletion	Chr10	7025922	7025923	1
Deletion	Chr10	8579006	8579007	1
Deletion	Chr4	8721553	8721554	1
Deletion	Chr4	9087079	9087081	2
Deletion	Chr12	10496915	10496917	2
Deletion	Chr5	10591073	10591074	1
Deletion	Chr12	11347001	11373000	26000	2
Deletion	Chr10	12340683	12340696	13
Deletion	Chr11	12612484	12612492	8
Deletion	Chr11	12901418	12901441	23
Deletion	Chr3	13468455	13468459	4
Deletion	Chr4	14157621	14157623	2
Deletion	Chr5	14289905	14289906	1
Deletion	Chr5	15461704	15461724	20
Deletion	Chr11	16152504	16152509	5
Deletion	Chr9	16305816	16305817	1
Deletion	Chr4	16449357	16449359	2
Deletion	Chr2	17991533	17991548	15
Deletion	Chr4	18043676	18043679	3
Deletion	Chr7	18437014	18437019	5
Deletion	Chr1	18679822	18679823	1
Deletion	Chr7	19283395	19283397	2
Deletion	Chr6	20290575	20290582	7
Deletion	Chr7	21199611	21199612	1
Deletion	Chr1	22111783	22111797	14
Deletion	Chr7	22622734	22622735	1
Deletion	Chr7	29092730	29092731	1	LOC_Os07g48596
Deletion	Chr3	29303185	29303186	1
Deletion	Chr4	30357093	30357096	3	LOC_Os04g51230

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18899338	18899338	1
Insertion	Chr1	20870277	20870321	45	LOC_Os01g37380
Insertion	Chr1	22788535	22788560	26
Insertion	Chr1	5150421	5150422	2
Insertion	Chr11	16530484	16530484	1
Insertion	Chr11	304740	304740	1
Insertion	Chr2	25607095	25607098	4
Insertion	Chr3	13472053	13472053	1
Insertion	Chr4	12476892	12476910	19
Insertion	Chr5	28745752	28745752	1
Insertion	Chr6	11366230	11366232	3	LOC_Os06g19870
Insertion	Chr7	10122396	10122396	1
Insertion	Chr7	12893345	12893345	1
Insertion	Chr7	21111137	21111137	1
Insertion	Chr8	14624669	14624670	2
Insertion	Chr8	24481449	24481466	18
Insertion	Chr9	2202998	2203077	80

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	951964	952173
Inversion	Chr11	4865519	5083703
Inversion	Chr5	4871602	4871793
Inversion	Chr11	5389502	5389688
Inversion	Chr11	12870880	12879123	LOC_Os11g22430
Inversion	Chr11	12870881	12879130	LOC_Os11g22430
Inversion	Chr5	14076675	14076878
Inversion	Chr9	22377014	22461339	2
Inversion	Chr6	25540955	25541161
Inversion	Chr3	27927962	27928171

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1435317	Chr4	2707693
Translocation	Chr11	1435338	Chr4	2707382
Translocation	Chr11	19696505	Chr10	12878065
Translocation	Chr11	22827128	Chr9	5060412	LOC_Os11g38520
Translocation	Chr11	22827313	Chr9	5060414	LOC_Os11g38520

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