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Mutant Information

Mutant Name	FN4449-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4449-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15701489	C-T	HET	INTERGENIC
SBS	Chr1	827287	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g02530
SBS	Chr11	13147258	G-A	HET	INTRON
SBS	Chr11	14083774	G-T	HET	INTERGENIC
SBS	Chr11	17440195	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g30000
SBS	Chr11	22104033	C-T	HET	INTERGENIC
SBS	Chr11	27088360	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g44750
SBS	Chr12	22449055	G-A	HET	INTRON
SBS	Chr2	19112550	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g32360
SBS	Chr2	20228279	G-A	HOMO	INTRON
SBS	Chr3	10134183	A-G	HET	INTERGENIC
SBS	Chr3	18235260	G-A	HET	INTERGENIC
SBS	Chr3	18235261	T-A	HET	INTERGENIC
SBS	Chr3	28121513	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g49400
SBS	Chr3	28121514	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	4467224	C-T	HOMO	INTERGENIC
SBS	Chr4	10301809	A-T	HET	INTERGENIC
SBS	Chr4	23752745	A-T	HOMO	UTR_5_PRIME
SBS	Chr4	23752746	G-T	HOMO	UTR_5_PRIME
SBS	Chr4	26845606	A-G	HET	INTRON
SBS	Chr5	22176739	C-A	HET	SYNONYMOUS_CODING
SBS	Chr5	23979148	A-G	HET	INTRON
SBS	Chr6	12945310	C-A	HET	INTRON
SBS	Chr6	19684845	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g33830
SBS	Chr6	20793854	A-T	HET	INTERGENIC
SBS	Chr6	23227396	T-A	HET	INTRON
SBS	Chr6	27504575	T-A	HET	INTERGENIC
SBS	Chr6	29211191	G-T	HET	INTERGENIC
SBS	Chr7	20964053	C-T	HOMO	INTERGENIC
SBS	Chr7	793143	C-T	HET	INTERGENIC
SBS	Chr8	10629545	T-G	HOMO	INTRON
SBS	Chr8	12441510	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20700
SBS	Chr9	12671266	C-T	HET	INTERGENIC
SBS	Chr9	13247897	C-T	HET	INTERGENIC
SBS	Chr9	22841025	G-A	HET	INTERGENIC
SBS	Chr9	8728744	A-T	HOMO	INTRON

Deletions: 101

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	63054	63056	2
Deletion	Chr6	110818	110819	1
Deletion	Chr11	330432	330433	1
Deletion	Chr6	450384	450385	1
Deletion	Chr3	899961	899962	1
Deletion	Chr2	934414	934418	4
Deletion	Chr7	1004006	1004007	1
Deletion	Chr2	1351432	1351439	7
Deletion	Chr2	1358874	1358890	16
Deletion	Chr9	3390118	3390119	1
Deletion	Chr10	3505707	3505708	1
Deletion	Chr12	3518564	3518565	1
Deletion	Chr10	3555803	3555804	1
Deletion	Chr11	3984043	3984044	1
Deletion	Chr9	4294966	4294968	2
Deletion	Chr10	4567032	4567033	1
Deletion	Chr10	5019579	5019585	6
Deletion	Chr1	5211718	5211719	1
Deletion	Chr4	5345561	5345573	12	LOC_Os04g09940
Deletion	Chr6	5876529	5876530	1
Deletion	Chr4	6182618	6182619	1
Deletion	Chr8	6369429	6369430	1
Deletion	Chr11	6396226	6396264	38
Deletion	Chr3	6414598	6414599	1
Deletion	Chr9	6416295	6416296	1	LOC_Os09g11500
Deletion	Chr3	6477461	6477463	2
Deletion	Chr8	6927215	6927216	1
Deletion	Chr4	7116361	7116363	2
Deletion	Chr2	7239001	7284000	45000	8
Deletion	Chr12	7456734	7456735	1
Deletion	Chr11	7647785	7647786	1
Deletion	Chr5	7668599	7668600	1
Deletion	Chr1	7903367	7903368	1
Deletion	Chr10	8114330	8114352	22
Deletion	Chr2	8220608	8220691	83
Deletion	Chr8	8362667	8362668	1
Deletion	Chr5	9848209	9848211	2
Deletion	Chr8	9866852	9866853	1	LOC_Os08g16180
Deletion	Chr8	9929270	9929271	1
Deletion	Chr4	10026350	10026351	1
Deletion	Chr10	10339461	10339462	1
Deletion	Chr4	10868421	10868440	19
Deletion	Chr12	11004110	11004111	1
Deletion	Chr6	11687914	11687915	1
Deletion	Chr5	11750352	11750353	1
Deletion	Chr7	11842300	11842357	57
Deletion	Chr1	12538446	12538469	23
Deletion	Chr4	12894619	12894620	1
Deletion	Chr4	13117972	13117975	3
Deletion	Chr10	13490234	13490235	1	LOC_Os10g26040
Deletion	Chr8	13594638	13594639	1
Deletion	Chr8	13636443	13636490	47
Deletion	Chr4	14166707	14166708	1
Deletion	Chr9	14230796	14230797	1
Deletion	Chr3	14256100	14256102	2
Deletion	Chr5	14559802	14559803	1
Deletion	Chr7	14696082	14696083	1	LOC_Os07g25630
Deletion	Chr8	14705882	14705885	3
Deletion	Chr6	14976864	14976874	10
Deletion	Chr8	15235841	15235842	1
Deletion	Chr10	15254659	15254660	1
Deletion	Chr8	15303552	15303562	10
Deletion	Chr8	15427187	15427188	1
Deletion	Chr12	15430960	15430962	2
Deletion	Chr2	15465818	15465822	4
Deletion	Chr4	15883567	15883568	1
Deletion	Chr12	15917231	15917233	2	LOC_Os12g27120
Deletion	Chr6	16020950	16020952	2
Deletion	Chr9	16688905	16688906	1
Deletion	Chr2	17147683	17147684	1
Deletion	Chr10	17285826	17285849	23	LOC_Os10g33010
Deletion	Chr3	17767447	17767450	3	LOC_Os03g31200
Deletion	Chr3	17945406	17945407	1
Deletion	Chr7	19324814	19324815	1
Deletion	Chr12	19523833	19523839	6
Deletion	Chr8	19525714	19525715	1
Deletion	Chr5	19536900	19536901	1
Deletion	Chr1	19646812	19646816	4
Deletion	Chr11	21078793	21078794	1
Deletion	Chr7	21271320	21271322	2
Deletion	Chr2	21353744	21353745	1
Deletion	Chr6	21368303	21368304	1
Deletion	Chr6	21584939	21584940	1
Deletion	Chr6	21926778	21926779	1
Deletion	Chr4	22767490	22767491	1
Deletion	Chr2	23212273	23212274	1
Deletion	Chr11	23654403	23654405	2
Deletion	Chr8	23816574	23816575	1
Deletion	Chr5	24045519	24045520	1
Deletion	Chr6	24056668	24056669	1
Deletion	Chr6	24163428	24163434	6
Deletion	Chr12	25668526	25668533	7
Deletion	Chr1	26334509	26334527	18
Deletion	Chr6	28263849	28263850	1
Deletion	Chr1	29486902	29486905	3	LOC_Os01g51290
Deletion	Chr2	31336745	31336780	35
Deletion	Chr1	32403175	32403179	4
Deletion	Chr2	34828664	34828695	31	LOC_Os02g56830
Deletion	Chr1	37614432	37614433	1
Deletion	Chr1	40603143	40603144	1
Deletion	Chr1	41659181	41659182	1

Insertions: 90

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10087630	10087630	1
Insertion	Chr1	18776225	18776230	6
Insertion	Chr1	2148084	2148084	1
Insertion	Chr1	30351652	30351652	1
Insertion	Chr1	32157225	32157225	1
Insertion	Chr1	3769371	3769371	1
Insertion	Chr1	38858773	38858773	1
Insertion	Chr1	40939340	40939340	1	LOC_Os01g70720
Insertion	Chr1	41786805	41786805	1
Insertion	Chr1	43000711	43000711	1	LOC_Os01g74230
Insertion	Chr10	12168206	12168206	1
Insertion	Chr10	12477069	12477069	1
Insertion	Chr10	16822796	16822796	1
Insertion	Chr10	1770	1770	1
Insertion	Chr10	20652040	20652040	1
Insertion	Chr10	342815	342815	1
Insertion	Chr10	8388381	8388381	1
Insertion	Chr11	21415784	21415784	1
Insertion	Chr11	25683123	25683123	1
Insertion	Chr11	2662104	2662105	2
Insertion	Chr11	27044991	27044991	1
Insertion	Chr11	28105288	28105291	4
Insertion	Chr12	11007901	11007902	2
Insertion	Chr12	12059218	12059218	1
Insertion	Chr12	12663077	12663077	1
Insertion	Chr12	14279212	14279212	1	LOC_Os12g24890
Insertion	Chr12	14321926	14321927	2
Insertion	Chr12	14877261	14877261	1
Insertion	Chr2	14840393	14840393	1
Insertion	Chr2	17825854	17825854	1
Insertion	Chr2	32483158	32483158	1
Insertion	Chr2	379494	379494	1
Insertion	Chr2	919991	919991	1
Insertion	Chr2	9354444	9354444	1
Insertion	Chr3	13469533	13469534	2
Insertion	Chr3	18742233	18742234	2
Insertion	Chr3	19130870	19130870	1
Insertion	Chr3	288499	288499	1
Insertion	Chr3	31582364	31582365	2
Insertion	Chr3	3783478	3783479	2
Insertion	Chr3	4273598	4273598	1
Insertion	Chr3	6617328	6617387	60
Insertion	Chr3	9389501	9389501	1
Insertion	Chr4	11721733	11721733	1
Insertion	Chr4	13757532	13757532	1
Insertion	Chr4	19386259	19386259	1
Insertion	Chr4	19532256	19532258	3
Insertion	Chr4	20095630	20095630	1
Insertion	Chr4	22986098	22986098	1
Insertion	Chr4	24227899	24227899	1
Insertion	Chr4	2586849	2586849	1
Insertion	Chr4	2631656	2631656	1
Insertion	Chr4	30486729	30486729	1
Insertion	Chr4	31202371	31202371	1
Insertion	Chr4	33035188	33035188	1	LOC_Os04g55530
Insertion	Chr4	8954481	8954481	1
Insertion	Chr4	9227864	9227864	1
Insertion	Chr5	20358272	20358273	2
Insertion	Chr5	26351526	26351529	4
Insertion	Chr5	3884937	3884937	1	LOC_Os05g07310
Insertion	Chr5	8030655	8030655	1
Insertion	Chr5	9730801	9730847	47
Insertion	Chr6	17169333	17169333	1
Insertion	Chr6	18648236	18648236	1	LOC_Os06g32060
Insertion	Chr6	2111442	2111443	2
Insertion	Chr6	24613610	24613613	4
Insertion	Chr6	27357948	27357954	7	LOC_Os06g45270
Insertion	Chr6	27380786	27380786	1
Insertion	Chr6	4802	4802	1
Insertion	Chr6	5789500	5789501	2
Insertion	Chr7	18195682	18195682	1	LOC_Os07g30740
Insertion	Chr7	26147412	26147416	5
Insertion	Chr7	3654042	3654042	1
Insertion	Chr7	6490831	6490831	1
Insertion	Chr7	7927044	7927044	1
Insertion	Chr7	9513202	9513202	1
Insertion	Chr8	12071665	12071665	1
Insertion	Chr8	12245075	12245075	1
Insertion	Chr8	14434942	14434942	1	LOC_Os08g23840
Insertion	Chr8	15300347	15300348	2
Insertion	Chr8	18772592	18772604	13
Insertion	Chr8	19393944	19394005	62
Insertion	Chr8	22386121	22386121	1
Insertion	Chr8	2719368	2719369	2
Insertion	Chr8	4190770	4190770	1
Insertion	Chr8	6447731	6447731	1
Insertion	Chr8	7844749	7844749	1
Insertion	Chr9	1928159	1928159	1
Insertion	Chr9	583222	583223	2
Insertion	Chr9	6822950	6822950	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3124201	3246605	LOC_Os11g06670
Inversion	Chr11	3124207	3246605	LOC_Os11g06670
Inversion	Chr2	4801609	4801681
Inversion	Chr9	13548782	13548946
Inversion	Chr7	23634914	23642874	LOC_Os07g39460

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	9427622	Chr1	35138890
Translocation	Chr5	10614492	Chr1	14983725
Translocation	Chr12	19817004	Chr7	23642860
Translocation	Chr12	19817163	Chr7	23634888

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