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Mutant Information

Mutant Name	FN4455-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4455-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 51

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14371180	C-T	HET	STOP_GAINED	LOC_Os01g25402
SBS	Chr1	16373511	T-C	HET	INTERGENIC
SBS	Chr1	37228803	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g64080
SBS	Chr1	38766484	C-T	HET	INTERGENIC
SBS	Chr1	42957774	G-T	HOMO	INTERGENIC
SBS	Chr1	589355	T-C	HET	INTRON
SBS	Chr1	5931762	A-G	HET	INTRON
SBS	Chr1	8117322	T-A	HET	INTRON
SBS	Chr10	21828800	A-C	HET	INTERGENIC
SBS	Chr10	8109301	T-A	HET	INTERGENIC
SBS	Chr10	8109308	A-T	HET	INTERGENIC
SBS	Chr11	10628099	C-T	HET	INTERGENIC
SBS	Chr11	1145132	C-T	HOMO	INTERGENIC
SBS	Chr11	13576720	G-C	HOMO	INTERGENIC
SBS	Chr11	25650243	T-G	HOMO	SPLICE_SITE_REGION
SBS	Chr11	9812976	G-A	HOMO	INTERGENIC
SBS	Chr12	13998496	C-A	HET	SYNONYMOUS_CODING
SBS	Chr12	19319945	C-T	HET	INTRON
SBS	Chr2	13457129	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g22570
SBS	Chr2	17500435	A-C	HET	INTRON
SBS	Chr2	26260275	C-G	HET	INTERGENIC
SBS	Chr2	32407558	T-A	HET	SYNONYMOUS_CODING
SBS	Chr2	32407559	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g52970
SBS	Chr2	32674295	G-A	HET	INTERGENIC
SBS	Chr2	9875409	A-G	HET	INTERGENIC
SBS	Chr3	10637413	T-A	HOMO	INTERGENIC
SBS	Chr3	17334041	G-C	HET	INTERGENIC
SBS	Chr3	19063180	G-C	HET	INTRON
SBS	Chr3	30412608	T-C	HET	INTERGENIC
SBS	Chr4	12871873	G-A	HOMO	INTERGENIC
SBS	Chr4	14369411	A-G	HOMO	INTERGENIC
SBS	Chr4	18857907	T-A	HET	INTERGENIC
SBS	Chr4	29892861	G-A	HET	INTERGENIC
SBS	Chr4	32542191	A-G	HET	INTERGENIC
SBS	Chr4	33840511	T-C	HET	INTRON
SBS	Chr5	14737874	A-G	HOMO	INTERGENIC
SBS	Chr5	19448616	C-A	HOMO	INTERGENIC
SBS	Chr5	22647990	G-A	HOMO	INTERGENIC
SBS	Chr5	22647991	C-A	HOMO	INTERGENIC
SBS	Chr5	28696161	C-T	HOMO	INTRON
SBS	Chr5	4001220	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07490
SBS	Chr5	9715068	T-C	HET	INTERGENIC
SBS	Chr6	8739357	A-T	HOMO	INTERGENIC
SBS	Chr7	21422251	G-A	HET	INTERGENIC
SBS	Chr7	6396602	T-G	HET	INTERGENIC
SBS	Chr8	12962956	A-G	HOMO	INTRON
SBS	Chr8	22515831	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	3808339	T-C	HET	INTRON
SBS	Chr9	17198216	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g28330
SBS	Chr9	4011057	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07890
SBS	Chr9	713017	T-C	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1975058	1975062	4
Deletion	Chr2	4468463	4468464	1
Deletion	Chr1	4666001	4685000	19000	LOC_Os01g09246
Deletion	Chr5	4737052	4737060	8
Deletion	Chr6	5391577	5391582	5
Deletion	Chr8	6176925	6176958	33
Deletion	Chr1	6540651	6540654	3
Deletion	Chr6	9436746	9436755	9
Deletion	Chr6	9881824	9881829	5	LOC_Os06g17040
Deletion	Chr7	10738885	10738886	1
Deletion	Chr6	12151612	12151613	1	LOC_Os06g21030
Deletion	Chr2	12155378	12155379	1
Deletion	Chr2	13414290	13414301	11
Deletion	Chr9	13652558	13652559	1
Deletion	Chr8	14086576	14086662	86
Deletion	Chr4	14495633	14495634	1
Deletion	Chr12	16307086	16307087	1
Deletion	Chr11	16655243	16655248	5
Deletion	Chr11	17164162	17164165	3
Deletion	Chr5	17496967	17496968	1
Deletion	Chr3	18917965	18917966	1
Deletion	Chr1	19534277	19534278	1
Deletion	Chr4	25220379	25220441	62
Deletion	Chr12	26151260	26151261	1
Deletion	Chr6	28495207	28495209	2
Deletion	Chr6	29723571	29723573	2
Deletion	Chr3	29966319	29966320	1
Deletion	Chr3	32937915	32937916	1
Deletion	Chr1	42158212	42158213	1

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1106556	1106556	1
Insertion	Chr10	7159754	7159755	2	LOC_Os10g12808
Insertion	Chr12	18990627	18990628	2
Insertion	Chr12	8075404	8075405	2
Insertion	Chr2	31408220	31408220	1
Insertion	Chr2	9244220	9244223	4
Insertion	Chr3	23561629	23561629	1
Insertion	Chr3	30434909	30434910	2
Insertion	Chr3	35435881	35435881	1
Insertion	Chr4	17209076	17209076	1
Insertion	Chr4	2843144	2843145	2
Insertion	Chr5	14653158	14653158	1
Insertion	Chr6	22905987	22905987	1
Insertion	Chr6	3850197	3850197	1
Insertion	Chr7	6460545	6460545	1	LOC_Os07g11680
Insertion	Chr8	15859020	15859020	1
Insertion	Chr8	23437205	23437205	1
Insertion	Chr8	7266096	7266097	2
Insertion	Chr9	18576995	18576996	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8645334	8645518
Inversion	Chr5	10754537	10820282
Inversion	Chr5	10754542	10820279
Inversion	Chr3	14726080	14726278
Inversion	Chr1	34902377	34902549	LOC_Os01g60340

No Translocation

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