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Mutant Information

Mutant Name	FN4463-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4463-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14636635	T-C	HET	INTERGENIC
SBS	Chr1	23686248	G-A	HET	INTERGENIC
SBS	Chr1	27793872	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g48490
SBS	Chr1	28227895	G-C	HET	INTERGENIC
SBS	Chr1	41271825	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g71300
SBS	Chr2	15648437	C-T	HET	INTERGENIC
SBS	Chr2	22974337	T-A	HOMO	STOP_GAINED	LOC_Os02g38020
SBS	Chr2	22974339	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g38020
SBS	Chr2	22974342	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g38020
SBS	Chr3	5776605	T-C	HET	INTERGENIC
SBS	Chr3	5776613	A-T	HOMO	INTERGENIC
SBS	Chr3	9402730	C-G	HET	START_GAINED
SBS	Chr3	9916943	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g17810
SBS	Chr3	17701094	C-A	HET	INTERGENIC
SBS	Chr3	27348174	C-T	HET	INTRON
SBS	Chr3	28646840	G-A	HOMO	INTERGENIC
SBS	Chr4	10529898	G-A	HET	INTRON
SBS	Chr4	21129990	G-A	HET	INTERGENIC
SBS	Chr4	26176385	T-C	HET	INTERGENIC
SBS	Chr5	398177	T-A	HET	SYNONYMOUS_CODING
SBS	Chr5	398178	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g01670
SBS	Chr5	398179	C-A	HET	STOP_GAINED	LOC_Os05g01670
SBS	Chr5	21634745	A-C	HET	INTRON
SBS	Chr6	883657	T-C	HET	INTERGENIC
SBS	Chr6	23029823	G-A	HET	INTERGENIC
SBS	Chr7	5960930	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g10900
SBS	Chr7	8682406	C-T	HET	INTRON
SBS	Chr7	8961431	G-T	HET	INTERGENIC
SBS	Chr7	9327097	A-C	HET	INTERGENIC
SBS	Chr7	11166578	C-T	HET	INTERGENIC
SBS	Chr7	11962178	T-C	HET	INTERGENIC
SBS	Chr7	18957108	G-A	HET	INTRON
SBS	Chr7	26306351	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	28727472	A-T	HET	STOP_GAINED	LOC_Os07g48100
SBS	Chr10	5924660	A-G	HET	INTERGENIC
SBS	Chr10	7261599	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13430
SBS	Chr11	7080693	G-A	HET	INTERGENIC
SBS	Chr11	7907136	A-T	HET	INTERGENIC
SBS	Chr11	9245966	G-A	HET	INTRON
SBS	Chr11	18745923	T-A	HET	INTRON
SBS	Chr11	23772745	A-G	HET	SYNONYMOUS_CODING
SBS	Chr12	8250018	A-G	HET	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	218661	218662	1
Deletion	Chr9	2437290	2437291	1
Deletion	Chr4	2564197	2564198	1
Deletion	Chr4	3080226	3080228	2
Deletion	Chr11	3795820	3795821	1
Deletion	Chr3	4932893	4932894	1
Deletion	Chr8	5046073	5046076	3
Deletion	Chr8	5786945	5786946	1
Deletion	Chr9	6658819	6658820	1
Deletion	Chr10	8223978	8223981	3
Deletion	Chr4	8635172	8635174	2
Deletion	Chr12	8680239	8680242	3
Deletion	Chr5	9904292	9904293	1
Deletion	Chr2	9964958	9964979	21
Deletion	Chr8	10790743	10790744	1
Deletion	Chr12	11689740	11689745	5
Deletion	Chr11	12104528	12104531	3
Deletion	Chr11	12108413	12108414	1
Deletion	Chr7	14259012	14259014	2
Deletion	Chr4	14976240	14976271	31
Deletion	Chr5	15367859	15367860	1
Deletion	Chr9	15670334	15670335	1
Deletion	Chr7	17256421	17256422	1
Deletion	Chr7	20797490	20797491	1
Deletion	Chr5	20839914	20839915	1	LOC_Os05g35100
Deletion	Chr7	24794232	24794233	1
Deletion	Chr1	26063515	26063516	1	LOC_Os01g45880
Deletion	Chr3	26131464	26131470	6	LOC_Os03g46220
Deletion	Chr2	26722355	26722376	21
Deletion	Chr3	26900011	26900027	16
Deletion	Chr6	29653116	29653117	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	18494308	18494308	1
Insertion	Chr3	21038827	21038827	1
Insertion	Chr12	23183714	23183719	6
Insertion	Chr1	34070401	34070401	1
Insertion	Chr2	18761118	18761118	1
Insertion	Chr2	20474594	20474594	1
Insertion	Chr2	23345060	23345060	1
Insertion	Chr2	33348033	33348033	1
Insertion	Chr3	4087624	4087624	1
Insertion	Chr4	11483185	11483186	2
Insertion	Chr4	14418783	14418783	1
Insertion	Chr5	10591073	10591073	1
Insertion	Chr6	12166880	12166880	1
Insertion	Chr7	9954405	9954405	1
Insertion	Chr10	9023677	9023679	3
Insertion	Chr11	12093571	12093590	20

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18220085	18220275	LOC_Os10g34140

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3711240	Chr2	7478966	2
Translocation	Chr9	3712509	Chr2	7478990	LOC_Os09g07430

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