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Mutant Information

Mutant Name	FN4466-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4466-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19284483	G-A	HET	INTERGENIC
SBS	Chr1	23755260	A-G	HET	INTERGENIC
SBS	Chr1	27014758	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g47270
SBS	Chr1	28805962	G-A	HET	INTERGENIC
SBS	Chr1	32516251	T-C	HET	INTRON
SBS	Chr1	33922001	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g58680
SBS	Chr10	6756997	G-A	HOMO	INTERGENIC
SBS	Chr11	2519055	C-G	HET	INTRON
SBS	Chr12	11648761	G-A	HET	INTRON
SBS	Chr12	21694593	C-G	HET	INTRON
SBS	Chr12	2856680	A-T	HET	INTERGENIC
SBS	Chr12	4281938	C-T	HET	INTERGENIC
SBS	Chr12	683877	G-C	HET	INTERGENIC
SBS	Chr2	1118779	G-A	HET	INTERGENIC
SBS	Chr2	11845502	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	12985169	T-G	HOMO	INTERGENIC
SBS	Chr2	12985170	G-T	HOMO	INTERGENIC
SBS	Chr2	28933418	G-A	HET	INTERGENIC
SBS	Chr3	21553602	C-T	HET	INTERGENIC
SBS	Chr3	24920867	A-T	HET	INTERGENIC
SBS	Chr3	31618995	G-C	HET	SYNONYMOUS_CODING
SBS	Chr3	32268990	A-G	HET	SYNONYMOUS_CODING
SBS	Chr3	4773395	A-G	HET	INTERGENIC
SBS	Chr4	10275426	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18600
SBS	Chr4	18876328	C-T	HOMO	STOP_GAINED	LOC_Os04g31570
SBS	Chr4	29282402	T-C	HET	INTERGENIC
SBS	Chr4	31990410	A-T	HET	STOP_GAINED	LOC_Os04g53670
SBS	Chr5	10138637	T-C	HET	INTERGENIC
SBS	Chr5	10432801	G-A	HET	INTERGENIC
SBS	Chr5	13274141	C-T	HOMO	INTRON
SBS	Chr5	22202970	T-C	HET	INTERGENIC
SBS	Chr5	23168241	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	23612939	A-T	HET	INTERGENIC
SBS	Chr5	29237157	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	3903176	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	5453462	C-G	HET	INTERGENIC
SBS	Chr6	15751423	C-T	HOMO	INTERGENIC
SBS	Chr6	22462902	T-C	HET	INTERGENIC
SBS	Chr6	24734489	G-A	HOMO	INTRON
SBS	Chr6	27489317	C-T	HET	INTERGENIC
SBS	Chr6	31177988	C-T	HOMO	INTERGENIC
SBS	Chr6	5766826	G-T	HET	INTERGENIC
SBS	Chr7	11192707	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18890
SBS	Chr7	7639276	T-A	HET	INTRON
SBS	Chr7	9317960	C-T	HET	INTERGENIC
SBS	Chr8	11599518	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19400
SBS	Chr8	26591842	G-A	HET	INTERGENIC
SBS	Chr8	5782034	A-T	HET	INTERGENIC

Deletions: 49

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	206256	206257	1
Deletion	Chr1	706908	706925	17
Deletion	Chr7	733733	733734	1
Deletion	Chr10	1255092	1255093	1
Deletion	Chr6	1520509	1520510	1
Deletion	Chr1	1825272	1825351	79
Deletion	Chr12	2177958	2177959	1
Deletion	Chr4	3350476	3350499	23
Deletion	Chr1	3401709	3401717	8	LOC_Os01g07212
Deletion	Chr9	6687649	6687650	1
Deletion	Chr3	7263065	7263076	11
Deletion	Chr3	8989108	8989109	1
Deletion	Chr1	10150633	10150634	1
Deletion	Chr5	10649957	10649960	3
Deletion	Chr7	10968349	10968350	1
Deletion	Chr8	11181878	11181879	1	LOC_Os08g18730
Deletion	Chr3	11233465	11233478	13
Deletion	Chr7	11606100	11606105	5
Deletion	Chr12	11952720	11952722	2
Deletion	Chr3	12295487	12295488	1
Deletion	Chr5	12879547	12879552	5
Deletion	Chr2	12915939	12915943	4	LOC_Os02g21730
Deletion	Chr6	13224438	13224439	1
Deletion	Chr8	13292001	13462000	170000	21
Deletion	Chr2	13455038	13455039	1	LOC_Os02g22570
Deletion	Chr8	13583682	13583685	3
Deletion	Chr1	13794001	13832000	38000	7
Deletion	Chr1	13838001	13861000	23000	5
Deletion	Chr8	14952447	14952448	1
Deletion	Chr8	16650401	16650412	11
Deletion	Chr2	16757935	16757937	2
Deletion	Chr12	16841767	16841770	3
Deletion	Chr4	16981874	16981877	3
Deletion	Chr6	19687794	19687799	5	LOC_Os06g33840
Deletion	Chr5	20452037	20452048	11
Deletion	Chr7	20486854	20486938	84
Deletion	Chr10	21079344	21079348	4
Deletion	Chr5	21198001	21264000	66000	14
Deletion	Chr12	21773001	21789000	16000	2
Deletion	Chr4	23257618	23257638	20
Deletion	Chr1	25174506	25174508	2	LOC_Os01g43930
Deletion	Chr6	25987424	25987462	38
Deletion	Chr4	26059208	26059209	1
Deletion	Chr11	26982412	26982413	1
Deletion	Chr1	27939720	27939722	2
Deletion	Chr1	29175998	29176040	42	LOC_Os01g50790
Deletion	Chr1	29640472	29640473	1
Deletion	Chr1	30126646	30126647	1	LOC_Os01g52430
Deletion	Chr1	39120498	39120516	18

Insertions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19330590	19330590	1
Insertion	Chr1	20441901	20441901	1
Insertion	Chr1	28814598	28814600	3
Insertion	Chr1	30699386	30699386	1
Insertion	Chr10	2165624	2165625	2
Insertion	Chr11	27968595	27968595	1
Insertion	Chr11	7580134	7580135	2
Insertion	Chr11	7920716	7920717	2
Insertion	Chr12	23760671	23760742	72
Insertion	Chr3	26766884	26766899	16
Insertion	Chr4	10372738	10372740	3
Insertion	Chr4	1370481	1370481	1
Insertion	Chr4	13775750	13775750	1
Insertion	Chr4	23681155	23681155	1
Insertion	Chr5	11102261	11102262	2
Insertion	Chr5	12204265	12204265	1
Insertion	Chr5	21823814	21823815	2
Insertion	Chr5	3831408	3831408	1
Insertion	Chr6	10988216	10988216	1
Insertion	Chr6	11827213	11827213	1
Insertion	Chr6	21474906	21474906	1
Insertion	Chr6	30211584	30211594	11
Insertion	Chr7	22434571	22434572	2
Insertion	Chr7	24240108	24240186	79
Insertion	Chr7	24784941	24784990	50
Insertion	Chr8	13399250	13399251	2
Insertion	Chr8	14837365	14837365	1
Insertion	Chr9	13846489	13846490	2
Insertion	Chr9	17452420	17452420	1
Insertion	Chr9	8743942	8743942	1	LOC_Os09g14720

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	21692582	21773080	LOC_Os12g35670

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	7638010	Chr2	3798617
Translocation	Chr7	9561138	Chr5	12027106	LOC_Os05g16790
Translocation	Chr11	11305409	Chr3	8275495	LOC_Os11g19610
Translocation	Chr10	15151887	Chr7	1473203	2
Translocation	Chr9	17923005	Chr3	30851529	LOC_Os09g29470
Translocation	Chr9	17923171	Chr3	30851494
Translocation	Chr11	18144085	Chr2	35610329
Translocation	Chr7	22380316	Chr3	18876768
Translocation	Chr7	22380317	Chr3	18877003
Translocation	Chr5	29707326	Chr2	18202509	LOC_Os05g51770

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