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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16219845	G-T	HET	SYNONYMOUS_CODING
SBS	Chr1	23041092	C-T	HOMO	INTERGENIC
SBS	Chr1	28124785	C-A	HET	INTERGENIC
SBS	Chr2	11722189	C-T	HOMO	INTRON
SBS	Chr2	16850263	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g28490
SBS	Chr2	20282309	T-A	HOMO	INTERGENIC
SBS	Chr2	29739202	C-T	HET	INTRON
SBS	Chr3	3875500	A-T	HOMO	INTERGENIC
SBS	Chr3	15766211	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27480
SBS	Chr3	18523917	C-T	HET	INTERGENIC
SBS	Chr4	14634311	G-C	HET	INTERGENIC
SBS	Chr4	32523044	C-T	HET	INTERGENIC
SBS	Chr4	34890346	C-G	HET	INTERGENIC
SBS	Chr5	831594	A-T	HET	STOP_GAINED	LOC_Os05g02440
SBS	Chr5	7054396	G-A	HET	INTERGENIC
SBS	Chr5	15954542	G-A	HOMO	INTERGENIC
SBS	Chr5	17045226	G-A	HET	INTERGENIC
SBS	Chr5	18601680	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g31930
SBS	Chr6	26397441	T-A	HET	INTERGENIC
SBS	Chr7	22932545	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	25407199	C-A	HET	INTERGENIC
SBS	Chr8	7943333	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g13350
SBS	Chr8	17086093	C-G	HOMO	INTERGENIC
SBS	Chr8	17692042	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28930
SBS	Chr9	1073942	G-T	HET	INTERGENIC
SBS	Chr9	1073943	C-T	HET	INTERGENIC
SBS	Chr9	11948590	G-A	HET	UTR_3_PRIME
SBS	Chr10	11248082	A-T	HET	SYNONYMOUS_CODING
SBS	Chr11	8238788	T-G	HOMO	INTERGENIC
SBS	Chr12	1273502	C-A	HET	INTRON
SBS	Chr12	9453348	G-T	HOMO	INTERGENIC
SBS	Chr12	26728066	C-T	HET	INTERGENIC
SBS	Chr12	27451266	G-T	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	155877	158418	2541
Deletion	Chr6	1374997	1374998	1	LOC_Os06g03560
Deletion	Chr4	1440954	1440976	22
Deletion	Chr10	1551655	1551660	5
Deletion	Chr8	2625619	2625620	1
Deletion	Chr7	3289159	3289173	14
Deletion	Chr1	3922934	3922939	5	LOC_Os01g08100
Deletion	Chr9	4223122	4223123	1
Deletion	Chr4	7829992	7829996	4
Deletion	Chr2	7974871	7974884	13
Deletion	Chr2	8054030	8054038	8
Deletion	Chr10	8318944	8318960	16
Deletion	Chr3	9254912	9254913	1
Deletion	Chr1	10708345	10708348	3
Deletion	Chr1	14434734	14434735	1
Deletion	Chr4	15187214	15187233	19
Deletion	Chr2	15387001	15439000	52000	11
Deletion	Chr3	16794911	16794931	20
Deletion	Chr5	18058001	18172000	114000	16
Deletion	Chr1	24262283	24262287	4
Deletion	Chr3	26250447	26250452	5
Deletion	Chr4	26741628	26741629	1
Deletion	Chr6	27950049	27950051	2	LOC_Os06g46110
Deletion	Chr7	28506687	28506698	11
Deletion	Chr1	30303763	30303770	7
Deletion	Chr3	31867001	32000000	133000	17
Deletion	Chr3	34449139	34449148	9	LOC_Os03g60620
Deletion	Chr3	34628095	34628096	1
Deletion	Chr4	34974702	34974707	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	13912052	13912054	3
Insertion	Chr10	9352156	9352157	2
Insertion	Chr3	5918248	5918248	1
Insertion	Chr8	26530008	26530008	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2750379	3931265	2
Inversion	Chr2	15364171	15655224	2
Inversion	Chr2	15364187	15660534	2
Inversion	Chr5	17754549	18183246
Inversion	Chr6	29354187	29478757	2
Inversion	Chr6	29354203	29478758	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	18171757	Chr2	8687646	LOC_Os05g31254
Translocation	Chr5	18183243	Chr2	8687621
Translocation	Chr6	30487174	Chr3	23511718

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