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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16013438	T-A	HET	INTERGENIC
SBS	Chr1	34045284	T-C	HOMO	UTR_5_PRIME
SBS	Chr1	34045287	T-C	HOMO	UTR_5_PRIME
SBS	Chr2	411969	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	10352234	A-G	HET	UTR_3_PRIME
SBS	Chr2	11633679	T-G	HET	INTERGENIC
SBS	Chr2	30277452	G-T	HOMO	INTRON
SBS	Chr2	31335363	C-T	HOMO	INTERGENIC
SBS	Chr3	35763067	C-A	HOMO	INTERGENIC
SBS	Chr4	2226053	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr4	5089470	C-T	HOMO	INTERGENIC
SBS	Chr4	19950274	G-T	HOMO	INTERGENIC
SBS	Chr6	8327275	C-A	HOMO	INTERGENIC
SBS	Chr6	23092625	A-G	HET	INTERGENIC
SBS	Chr7	4193706	T-C	HET	INTRON
SBS	Chr7	7389114	T-G	HOMO	INTERGENIC
SBS	Chr7	11811605	C-G	HET	SYNONYMOUS_CODING
SBS	Chr7	13612458	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24020
SBS	Chr7	28421546	C-A	HOMO	INTERGENIC
SBS	Chr9	3071183	A-G	HOMO	INTERGENIC
SBS	Chr10	9877701	A-G	HET	INTERGENIC
SBS	Chr10	11210741	G-A	HOMO	INTERGENIC
SBS	Chr11	292928	A-G	HET	UTR_5_PRIME
SBS	Chr11	1514375	C-T	HET	INTERGENIC
SBS	Chr12	2675052	G-A	HOMO	INTERGENIC
SBS	Chr12	9710876	G-C	HET	INTERGENIC
SBS	Chr12	27207326	C-A	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1929350	1929352	2
Deletion	Chr6	2684771	2684772	1
Deletion	Chr4	5548338	5548339	1	LOC_Os04g10270
Deletion	Chr9	8065001	8357000	292000	31
Deletion	Chr9	8360001	8454000	94000	21
Deletion	Chr9	8471379	8471466	87	LOC_Os09g14340
Deletion	Chr9	8578001	8602000	24000	3
Deletion	Chr12	10359513	10359557	44
Deletion	Chr5	10649631	10649632	1
Deletion	Chr10	12758380	12758382	2	LOC_Os10g24810
Deletion	Chr7	13610203	13610204	1
Deletion	Chr7	13903213	13903215	2
Deletion	Chr2	15903581	15903587	6	LOC_Os02g27050
Deletion	Chr10	16399913	16399914	1
Deletion	Chr12	17295133	17295134	1
Deletion	Chr3	19150121	19150122	1
Deletion	Chr9	22393069	22393070	1
Deletion	Chr12	22782292	22782294	2
Deletion	Chr4	24073554	24073566	12	LOC_Os04g40530
Deletion	Chr8	25030729	25030730	1
Deletion	Chr11	26602329	26602330	1
Deletion	Chr7	26878408	26878409	1
Deletion	Chr7	27542879	27542890	11
Deletion	Chr4	28278665	28278880	215	LOC_Os04g47650
Deletion	Chr2	32674196	32674197	1

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	14407856	14407856	1
Insertion	Chr2	31558675	31558675	1
Insertion	Chr1	16854899	16854899	1
Insertion	Chr4	3399926	3399927	2
Insertion	Chr4	7412627	7412627	1
Insertion	Chr4	10383840	10383840	1
Insertion	Chr4	10575288	10575289	2
Insertion	Chr4	13744416	13744416	1	LOC_Os04g24060
Insertion	Chr5	11999	11999	1
Insertion	Chr6	7696237	7696238	2
Insertion	Chr6	11115105	11115105	1
Insertion	Chr6	18844682	18844682	1
Insertion	Chr7	2295095	2295095	1
Insertion	Chr7	17037778	17037833	56	LOC_Os07g29060
Insertion	Chr7	21267142	21267142	1
Insertion	Chr8	8605728	8605748	21
Insertion	Chr8	11490476	11490476	1
Insertion	Chr9	8475217	8475217	1
Insertion	Chr11	15226477	15226477	1
Insertion	Chr11	24056760	24056760	1
Insertion	Chr12	18801524	18801528	5

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	10565808	10566073

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	14460049	Chr4	8661634	LOC_Os04g25070
Translocation	Chr9	16310545	Chr8	15578687
Translocation	Chr11	23840367	Chr5	25344899	LOC_Os05g40650

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