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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	3710190	A-G	HET	INTERGENIC
SBS	Chr2	13046400	C-T	HOMO	INTERGENIC
SBS	Chr2	17066123	T-A	HOMO	INTERGENIC
SBS	Chr2	17066127	G-T	HOMO	INTERGENIC
SBS	Chr3	6506541	G-A	HOMO	INTERGENIC
SBS	Chr3	15839722	C-A	HET	INTERGENIC
SBS	Chr3	20131623	G-A	HET	STOP_GAINED	LOC_Os03g36290
SBS	Chr3	24374368	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g43610
SBS	Chr3	26124347	C-T	HET	INTERGENIC
SBS	Chr5	1643881	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g03740
SBS	Chr5	8664270	C-T	HOMO	INTERGENIC
SBS	Chr6	3117463	G-C	HET	INTERGENIC
SBS	Chr6	8860496	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15640
SBS	Chr6	22862747	C-T	HET	INTERGENIC
SBS	Chr7	7511671	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	11116990	G-A	HET	INTERGENIC
SBS	Chr7	14284216	C-T	HET	INTERGENIC
SBS	Chr7	23995263	T-G	HOMO	INTERGENIC
SBS	Chr7	24982855	C-A	HOMO	INTERGENIC
SBS	Chr8	3541689	C-T	HET	INTERGENIC
SBS	Chr8	13884079	G-A	HET	INTERGENIC
SBS	Chr8	15622051	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g25670
SBS	Chr8	15685031	G-T	HET	INTERGENIC
SBS	Chr8	27269640	G-T	HOMO	INTRON
SBS	Chr9	1631142	C-T	HET	STOP_GAINED	LOC_Os09g03360
SBS	Chr9	11391953	A-C	HET	SYNONYMOUS_CODING
SBS	Chr9	12405741	A-G	HET	INTERGENIC
SBS	Chr9	13274031	C-T	HET	INTRON
SBS	Chr9	21274108	C-G	HET	INTRON
SBS	Chr10	7908313	C-T	HET	INTERGENIC
SBS	Chr10	9169163	T-C	HOMO	INTERGENIC
SBS	Chr10	13401317	C-A	HET	INTRON
SBS	Chr10	15817455	A-T	HET	INTRON
SBS	Chr12	9137400	C-A	HET	INTERGENIC
SBS	Chr12	12567658	C-A	HOMO	INTERGENIC
SBS	Chr12	20875140	C-T	HET	INTERGENIC
SBS	Chr12	21739452	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35720

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	422709	422723	14	LOC_Os12g01710
Deletion	Chr3	1106286	1106294	8
Deletion	Chr12	1672006	1672010	4
Deletion	Chr10	2462235	2462256	21
Deletion	Chr5	2690615	2690619	4	LOC_Os05g05420
Deletion	Chr3	2835577	2835600	23
Deletion	Chr9	4349164	4349165	1
Deletion	Chr12	5307125	5307126	1
Deletion	Chr8	5662476	5662487	11
Deletion	Chr8	8322114	8322115	1
Deletion	Chr1	9743965	9743971	6	LOC_Os01g17010
Deletion	Chr8	10226024	10226029	5
Deletion	Chr8	10561132	10561148	16
Deletion	Chr9	10979099	10979111	12
Deletion	Chr6	12493558	12493571	13
Deletion	Chr8	12651492	12651496	4
Deletion	Chr10	13865416	13865418	2
Deletion	Chr10	14381531	14381545	14	LOC_Os10g27260
Deletion	Chr12	15195711	15195781	70
Deletion	Chr3	15519273	15519275	2
Deletion	Chr1	15728310	15728352	42
Deletion	Chr12	15794524	15794526	2
Deletion	Chr9	16126355	16126356	1
Deletion	Chr12	16861037	16861038	1
Deletion	Chr3	17097648	17097652	4
Deletion	Chr1	17671004	17671005	1	LOC_Os01g32250
Deletion	Chr6	19913104	19913106	2
Deletion	Chr12	20895839	20895841	2
Deletion	Chr6	22062501	22062564	63
Deletion	Chr8	23297357	23297358	1
Deletion	Chr5	26144223	26144231	8	LOC_Os05g44970
Deletion	Chr5	26387280	26387286	6
Deletion	Chr11	28734953	28735034	81
Deletion	Chr5	29411022	29411023	1
Deletion	Chr1	34257260	34257263	3
Deletion	Chr4	35056978	35056994	16
Deletion	Chr1	41335477	41335478	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	36342653	36342653	1
Insertion	Chr2	28414957	28414958	2
Insertion	Chr3	12448369	12448369	1	LOC_Os03g21790
Insertion	Chr11	18382735	18382736	2
Insertion	Chr2	8412118	8412119	2
Insertion	Chr7	12473205	12473205	1
Insertion	Chr8	23489010	23489012	3
Insertion	Chr12	23487966	23487975	10

Inversions: 12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3362415	3362595
Inversion	Chr9	3483140	3483851	LOC_Os09g07130
Inversion	Chr6	7668658	7668773
Inversion	Chr3	9762216	9762381
Inversion	Chr9	14776349	15584871	LOC_Os09g24800
Inversion	Chr9	14776359	15584871	LOC_Os09g24800
Inversion	Chr6	16849707	16849820
Inversion	Chr3	19490145	19490346
Inversion	Chr6	29411149	29940887
Inversion	Chr6	29411208	29940897	LOC_Os06g48610
Inversion	Chr3	31421927	31722344
Inversion	Chr3	31421931	31722342

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	7704256	Chr8	18415246
Translocation	Chr10	9066800	Chr3	13497193	LOC_Os03g16430
Translocation	Chr11	27498163	Chr7	25204012

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