Search Nipponbare

Mutant Information

Mutant Name	FN4481-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4481-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13732839	C-A	HET	INTERGENIC
SBS	Chr1	21100125	G-A	HOMO	INTERGENIC
SBS	Chr1	39480859	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	39816815	C-T	HET	SPLICE_SITE_REGION
SBS	Chr1	5212725	T-C	HET	INTRON
SBS	Chr1	5431653	A-T	HET	INTERGENIC
SBS	Chr10	16767995	G-A	HET	SPLICE_SITE_REGION
SBS	Chr10	19276578	C-A	HET	INTRON
SBS	Chr11	1413459	G-T	HET	INTRON
SBS	Chr11	16028557	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g27850
SBS	Chr11	9993606	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g17850
SBS	Chr12	13524521	G-A	HET	INTERGENIC
SBS	Chr12	15198987	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	2634355	C-T	HOMO	INTERGENIC
SBS	Chr12	2634356	A-T	HOMO	INTERGENIC
SBS	Chr12	3995526	A-G	HOMO	INTERGENIC
SBS	Chr12	8406212	T-C	HET	INTRON
SBS	Chr2	15666353	G-A	HET	INTERGENIC
SBS	Chr3	22258776	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	5905328	G-A	HET	INTERGENIC
SBS	Chr4	16269173	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g27520
SBS	Chr4	26992106	G-A	HOMO	INTERGENIC
SBS	Chr4	32604522	C-T	HET	INTERGENIC
SBS	Chr4	4579776	G-A	HOMO	INTERGENIC
SBS	Chr5	14828528	T-A	HOMO	INTERGENIC
SBS	Chr5	26553793	A-G	HOMO	INTERGENIC
SBS	Chr6	1107683	G-A	HET	INTERGENIC
SBS	Chr6	14526663	G-A	HET	INTERGENIC
SBS	Chr6	20416124	C-T	HET	INTERGENIC
SBS	Chr6	8811972	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15540
SBS	Chr7	1070125	T-C	HET	INTRON
SBS	Chr7	11679430	G-T	HET	INTRON
SBS	Chr7	15633013	A-T	HET	INTERGENIC
SBS	Chr7	25847373	A-G	HOMO	INTERGENIC
SBS	Chr7	27838357	G-C	HOMO	INTERGENIC
SBS	Chr7	4004488	G-A	HOMO	INTERGENIC
SBS	Chr8	12320185	T-A	HET	INTERGENIC
SBS	Chr8	20414080	G-A	HET	INTRON
SBS	Chr8	20583970	A-T	HET	INTERGENIC
SBS	Chr8	8015298	C-T	HOMO	INTERGENIC
SBS	Chr9	15316200	C-T	HET	INTERGENIC
SBS	Chr9	16546335	A-G	HOMO	INTRON
SBS	Chr9	661415	T-C	HET	INTERGENIC
SBS	Chr9	9626785	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15750

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2710371	2710373	2
Deletion	Chr12	3489122	3489123	1
Deletion	Chr12	4133019	4133031	12	LOC_Os12g08110
Deletion	Chr1	4187174	4187175	1
Deletion	Chr12	4233833	4233835	2
Deletion	Chr1	4664582	4664583	1
Deletion	Chr1	6056431	6056432	1
Deletion	Chr5	6539473	6539474	1
Deletion	Chr12	7957828	7957842	14
Deletion	Chr8	8740457	8740460	3
Deletion	Chr11	9896224	9896286	62
Deletion	Chr8	13313001	13462000	149000	19
Deletion	Chr12	14133670	14133703	33	LOC_Os12g24680
Deletion	Chr1	14984857	14984862	5	LOC_Os01g26400
Deletion	Chr4	15282126	15282129	3
Deletion	Chr5	15812061	15812062	1	LOC_Os05g27180
Deletion	Chr12	16995780	16995781	1
Deletion	Chr6	18938655	18938658	3
Deletion	Chr10	18999791	18999793	2
Deletion	Chr1	20580567	20580648	81
Deletion	Chr8	21000001	21055000	55000	10
Deletion	Chr3	21722245	21722246	1
Deletion	Chr4	21745291	21745295	4
Deletion	Chr11	22372030	22372035	5
Deletion	Chr12	23217879	23217880	1
Deletion	Chr2	25127717	25127734	17
Deletion	Chr11	26024241	26024258	17
Deletion	Chr11	27030543	27030544	1
Deletion	Chr8	27210934	27210935	1
Deletion	Chr8	28207264	28207269	5
Deletion	Chr6	30254113	30254114	1	LOC_Os06g49960
Deletion	Chr1	31507863	31507869	6
Deletion	Chr1	39214415	39214416	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	13088473	13088473	1
Insertion	Chr12	15706385	15706385	1
Insertion	Chr12	17680373	17680414	42
Insertion	Chr12	20711488	20711489	2
Insertion	Chr2	16230649	16230649	1
Insertion	Chr3	33116158	33116161	4
Insertion	Chr4	21054090	21054091	2
Insertion	Chr6	14261124	14261128	5
Insertion	Chr7	3071151	3071192	42
Insertion	Chr8	6385390	6385390	1
Insertion	Chr9	18313695	18313712	18

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	11879326	12323915
Inversion	Chr2	14163763	14163958	LOC_Os02g24430
Inversion	Chr10	16125432	16667635	LOC_Os10g30910
Inversion	Chr6	17472425	17472583
Inversion	Chr8	20855629	21078802	LOC_Os08g33430
Inversion	Chr8	20855644	21078814	LOC_Os08g33430

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	556778	Chr2	34015809

Main menu

You are here

Search Nipponbare