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Mutant Information

Mutant Name	FN4494-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4494-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 57

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	936306	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g02730
SBS	Chr1	5344132	G-T	HOMO	INTERGENIC
SBS	Chr1	16331620	T-G	HET	INTERGENIC
SBS	Chr1	17239993	C-A	HET	INTERGENIC
SBS	Chr1	17332167	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g31660
SBS	Chr1	35551953	A-G	HET	INTERGENIC
SBS	Chr1	39814402	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68510
SBS	Chr2	20945880	A-T	HOMO	SPLICE_SITE_REGION
SBS	Chr3	1398269	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g03260
SBS	Chr3	2330221	A-G	HET	INTRON
SBS	Chr3	2475835	T-A	HET	INTERGENIC
SBS	Chr3	8360325	G-A	HET	INTERGENIC
SBS	Chr3	8378057	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15310
SBS	Chr3	13505158	G-A	HET	INTERGENIC
SBS	Chr3	13796672	G-T	HET	INTRON
SBS	Chr3	25338358	G-T	HET	INTRON
SBS	Chr4	1882267	G-C	HET	INTERGENIC
SBS	Chr4	8649572	G-A	HOMO	INTERGENIC
SBS	Chr4	10448697	C-T	HOMO	INTERGENIC
SBS	Chr4	13068776	A-T	HOMO	INTRON
SBS	Chr4	15036164	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g25870
SBS	Chr4	21031056	C-T	HET	INTERGENIC
SBS	Chr4	27703127	T-A	HOMO	INTERGENIC
SBS	Chr5	7663366	G-A	HOMO	INTERGENIC
SBS	Chr5	12875203	G-A	HOMO	INTERGENIC
SBS	Chr5	13972461	G-T	HOMO	INTRON
SBS	Chr5	21326587	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g36010
SBS	Chr5	29004962	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g50600
SBS	Chr6	970501	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	10283412	G-T	HET	INTERGENIC
SBS	Chr6	12727849	C-T	HET	INTERGENIC
SBS	Chr7	4224279	C-A	HOMO	INTERGENIC
SBS	Chr7	13609459	C-T	HET	INTERGENIC
SBS	Chr7	29452473	G-T	HET	INTRON
SBS	Chr8	13237109	A-T	HOMO	INTERGENIC
SBS	Chr8	21150618	T-C	HET	INTERGENIC
SBS	Chr8	22485744	G-C	HET	INTERGENIC
SBS	Chr9	1598324	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03300
SBS	Chr9	7805010	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g13480
SBS	Chr9	16216288	C-A	HET	INTERGENIC
SBS	Chr10	7142970	G-A	HET	INTERGENIC
SBS	Chr10	10270504	C-A	HET	INTERGENIC
SBS	Chr10	11546284	G-A	HET	INTERGENIC
SBS	Chr10	12530143	G-A	HET	INTRON
SBS	Chr11	3020685	G-A	HET	UTR_5_PRIME
SBS	Chr11	4462760	G-A	HOMO	INTERGENIC
SBS	Chr11	13993416	G-T	HET	INTERGENIC
SBS	Chr11	16925564	T-C	HOMO	INTERGENIC
SBS	Chr11	23497668	G-A	HET	INTERGENIC
SBS	Chr12	8358042	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14630
SBS	Chr12	8358113	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14630
SBS	Chr12	9253128	A-G	HET	INTERGENIC
SBS	Chr12	14010947	G-A	HET	INTERGENIC
SBS	Chr12	14010949	T-A	HET	INTERGENIC
SBS	Chr12	16944042	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28670
SBS	Chr12	16989198	C-T	HET	INTRON
SBS	Chr12	25446228	G-A	HET	UTR_5_PRIME

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	128202	128204	2
Deletion	Chr8	1854683	1854688	5
Deletion	Chr11	2240856	2240858	2	LOC_Os11g05110
Deletion	Chr12	4407609	4407610	1
Deletion	Chr4	5136380	5136381	1
Deletion	Chr5	6309263	6309264	1
Deletion	Chr10	6318405	6318406	1
Deletion	Chr8	7222340	7222341	1
Deletion	Chr7	7648947	7648954	7	LOC_Os07g13340
Deletion	Chr5	8993028	8993048	20
Deletion	Chr5	9239800	9239807	7
Deletion	Chr8	9925883	9925954	71
Deletion	Chr7	10768960	10768963	3
Deletion	Chr6	11365564	11365565	1
Deletion	Chr12	14813678	14813705	27
Deletion	Chr12	15212693	15212697	4
Deletion	Chr4	15266474	15266486	12
Deletion	Chr12	16471312	16471313	1
Deletion	Chr7	18140221	18140287	66
Deletion	Chr9	18207684	18207685	1
Deletion	Chr11	19416594	19416598	4
Deletion	Chr2	20071226	20071317	91
Deletion	Chr9	21172505	21172506	1
Deletion	Chr1	21713248	21713249	1
Deletion	Chr4	25891275	25891277	2
Deletion	Chr3	26793522	26793536	14
Deletion	Chr3	28918139	28918141	2
Deletion	Chr7	29086688	29086689	1
Deletion	Chr4	29093416	29093439	23
Deletion	Chr1	34927905	34927906	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	3863987	3863987	1
Insertion	Chr4	23086445	23086445	1
Insertion	Chr1	762500	762556	57
Insertion	Chr2	21650670	21650742	73
Insertion	Chr2	28748696	28748696	1
Insertion	Chr3	11279349	11279356	8
Insertion	Chr7	4280190	4280190	1
Insertion	Chr7	23661243	23661246	4
Insertion	Chr10	4437033	4437038	6
Insertion	Chr11	7230591	7230591	1
Insertion	Chr12	26967991	26967992	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	17822065	17822188

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8111405	Chr9	19170309
Translocation	Chr6	21870113	Chr1	21652226	2

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