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Mutant Information

Mutant Name	FN4498-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4498-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 69

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	19021600	C-T	HET
SBS	Chr1	2973036	T-C	HET
SBS	Chr1	7084677	G-T	HET	LOC_Os01g12790
SBS	Chr1	7094440	C-G	HET	LOC_Os01g12810
SBS	Chr1	7301673	T-A	HET
SBS	Chr10	12386668	C-T	HET
SBS	Chr10	14915385	C-T	HET
SBS	Chr10	15008763	T-C	HET
SBS	Chr10	17276395	T-A	HET
SBS	Chr10	17536680	C-G	HET
SBS	Chr10	19459676	T-C	HOMO
SBS	Chr10	4424910	A-T	HET	LOC_Os10g08180
SBS	Chr11	14988391	G-T	HET
SBS	Chr11	1674935	C-A	HET
SBS	Chr11	21153201	C-T	HET
SBS	Chr11	26055311	G-T	HOMO
SBS	Chr11	27372646	G-T	HOMO	LOC_Os11g45230
SBS	Chr11	9354780	C-A	HET
SBS	Chr11	9354781	C-A	HET	LOC_Os11g16850
SBS	Chr12	13431970	C-T	HET	LOC_Os12g23670
SBS	Chr12	17127385	G-T	HOMO
SBS	Chr12	22246935	A-G	HET
SBS	Chr12	23347860	C-T	HET
SBS	Chr12	26093368	G-T	HET
SBS	Chr12	26093369	T-G	HET
SBS	Chr2	1111580	G-A	HET
SBS	Chr2	12901312	C-A	HET
SBS	Chr2	17658240	G-C	HET	LOC_Os02g29660
SBS	Chr2	18769683	G-T	HOMO
SBS	Chr2	19726600	G-A	HET
SBS	Chr2	2696339	T-G	HET	LOC_Os02g05560
SBS	Chr2	29740751	A-T	HET
SBS	Chr2	35867711	C-T	HOMO	LOC_Os02g58710
SBS	Chr3	12788125	C-A	HOMO
SBS	Chr3	14024124	C-T	HOMO
SBS	Chr3	19035129	G-A	HET	LOC_Os03g33280
SBS	Chr3	25044447	G-A	HET
SBS	Chr3	27465629	G-A	HET
SBS	Chr3	27731676	A-T	HET
SBS	Chr3	46039	G-T	HET
SBS	Chr4	16302299	A-T	HOMO
SBS	Chr4	1946912	C-T	HOMO
SBS	Chr4	26455122	A-T	HET
SBS	Chr4	29820569	G-T	HET	LOC_Os04g50000
SBS	Chr4	3833704	C-A	HET
SBS	Chr4	6546355	G-T	HOMO
SBS	Chr5	10369529	C-T	HET
SBS	Chr5	10705460	C-T	HET
SBS	Chr5	15639445	G-T	HET
SBS	Chr5	16122988	G-A	HET
SBS	Chr5	20587555	G-T	HET
SBS	Chr5	20587557	A-T	HET
SBS	Chr5	25729610	C-A	HET
SBS	Chr6	11682423	T-C	HET	LOC_Os06g20330
SBS	Chr6	15758825	A-G	HET
SBS	Chr6	22357251	T-C	HET	LOC_Os06g37760
SBS	Chr6	7381769	G-A	HET
SBS	Chr6	8329705	C-T	HET
SBS	Chr6	8559674	C-T	HET	LOC_Os06g15100
SBS	Chr7	13991998	T-C	HET	LOC_Os07g24590
SBS	Chr7	14110879	C-A	HET
SBS	Chr7	19603596	A-T	HET
SBS	Chr7	5493733	T-C	HET
SBS	Chr7	927310	T-A	HET
SBS	Chr8	11520003	G-C	HET
SBS	Chr8	13510509	C-T	HET
SBS	Chr9	11058825	C-G	HET
SBS	Chr9	19740806	C-T	HOMO
SBS	Chr9	20104239	G-A	HOMO

Deletions: 48

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2272854	2272854	1
Deletion	Chr2	3045226	3045233	8
Deletion	Chr7	3489595	3489595	1
Deletion	Chr9	4590610	4590610	1
Deletion	Chr10	4871521	4871522	2
Deletion	Chr8	5704069	5704070	2
Deletion	Chr8	6165890	6165890	1
Deletion	Chr8	6688550	6688550	1
Deletion	Chr7	8833360	8833360	1
Deletion	Chr4	9400140	9400147	8	LOC_Os04g17140
Deletion	Chr1	9786865	9786866	2
Deletion	Chr7	11451447	11451454	8
Deletion	Chr11	11733691	11733691	1
Deletion	Chr6	12434200	12434211	12
Deletion	Chr5	13239780	13239780	1
Deletion	Chr8	13361652	13361666	15
Deletion	Chr3	13468456	13468459	4
Deletion	Chr1	13625198	13625198	1
Deletion	Chr1	14254043	14254073	31
Deletion	Chr7	14931332	14931348	17
Deletion	Chr12	15525289	15525298	10	LOC_Os12g26560
Deletion	Chr8	15539798	15539801	4
Deletion	Chr11	16099491	16099502	12
Deletion	Chr3	16474817	16474832	16	LOC_Os03g29020
Deletion	Chr1	16628611	16628611	1
Deletion	Chr1	16894380	16894380	1
Deletion	Chr3	17945406	17945406	1
Deletion	Chr1	18277564	18277569	6
Deletion	Chr2	18769670	18769671	2
Deletion	Chr11	19790504	19790504	1
Deletion	Chr6	20323142	20323149	8
Deletion	Chr5	20603497	20603497	1
Deletion	Chr5	20625487	20625487	1	LOC_Os05g34760
Deletion	Chr5	22113896	22113897	2
Deletion	Chr2	22293367	22293367	1
Deletion	Chr10	22405187	22405188	2	LOC_Os10g41610
Deletion	Chr5	22567579	22567589	11
Deletion	Chr7	22798753	22798760	8
Deletion	Chr2	24253390	24253473	84
Deletion	Chr7	24335366	24335369	4	LOC_Os07g40610
Deletion	Chr6	24531108	24531109	2
Deletion	Chr12	25735822	25735822	1
Deletion	Chr11	25994498	25994498	1
Deletion	Chr2	26003675	26003676	2
Deletion	Chr7	26774183	26774200	18
Deletion	Chr2	28667087	28667096	10
Deletion	Chr3	28983778	28983778	1
Deletion	Chr3	31593514	31593514	1

Insertions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15788693	15788693	1
Insertion	Chr1	30326319	30326319	1
Insertion	Chr1	32157225	32157225	1
Insertion	Chr1	34123379	34123379	1
Insertion	Chr10	18442930	18442930	1
Insertion	Chr10	7054922	7054922	1
Insertion	Chr11	12110389	12110436	48
Insertion	Chr11	12172742	12172819	78
Insertion	Chr12	19334771	19334771	1
Insertion	Chr12	25527266	25527267	2
Insertion	Chr12	6962567	6962573	7
Insertion	Chr12	905434	905435	2
Insertion	Chr12	9829199	9829199	1
Insertion	Chr2	12118827	12118913	87
Insertion	Chr2	18198963	18198965	3
Insertion	Chr2	22771892	22771914	23
Insertion	Chr3	14795103	14795103	1
Insertion	Chr4	27972062	27972075	14
Insertion	Chr4	3977257	3977279	23
Insertion	Chr4	9035808	9035808	1
Insertion	Chr5	1696042	1696042	1
Insertion	Chr6	3779538	3779538	1
Insertion	Chr6	8546516	8546516	1
Insertion	Chr7	14148063	14148112	50
Insertion	Chr7	18184723	18184723	1
Insertion	Chr7	2417384	2417384	1
Insertion	Chr7	26765375	26765375	1
Insertion	Chr8	11044147	11044190	44
Insertion	Chr8	19945355	19945361	7
Insertion	Chr8	20164254	20164359	106
Insertion	Chr9	14134995	14135005	11
Insertion	Chr9	3178230	3178231	2
Insertion	Chr9	5517624	5517624	1	LOC_Os09g10140
Insertion	Chr9	7385407	7385408	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr7	423871	592511
Inversion	Chr7	423876	592521
Inversion	Chr1	5314037	5314211
Inversion	Chr11	20857986	20885593
Inversion	Chr11	20858017	20885605
Inversion	Chr2	24156120	24156277

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	16998603	Chr6	21004596
Translocation	Chr11	18846692	Chr4	16025045
Translocation	Chr2	20476679	Chr1	23511189	LOC_Os01g41530
Translocation	Chr2	20476688	Chr1	24042911

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