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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22046291	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39190
SBS	Chr1	296547	T-A	HET	INTERGENIC
SBS	Chr1	296548	C-A	HET	INTERGENIC
SBS	Chr1	37697946	T-A	HOMO	INTRON
SBS	Chr1	6555449	C-A	HET	INTERGENIC
SBS	Chr10	170814	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01260
SBS	Chr10	1890395	G-A	HET	UTR_3_PRIME
SBS	Chr10	7796689	A-C	HET	INTERGENIC
SBS	Chr12	21917031	A-T	HET	INTERGENIC
SBS	Chr12	5601415	G-A	HET	INTERGENIC
SBS	Chr2	10102526	G-T	HET	STOP_GAINED	LOC_Os02g17550
SBS	Chr2	11008110	C-T	HOMO	INTERGENIC
SBS	Chr2	12673635	C-T	HET	INTERGENIC
SBS	Chr2	15965125	A-G	HET	INTRON
SBS	Chr2	25855244	C-T	HOMO	INTERGENIC
SBS	Chr2	26228986	C-T	HET	INTERGENIC
SBS	Chr3	11796980	C-A	HET	INTERGENIC
SBS	Chr3	14713910	C-A	HET	INTERGENIC
SBS	Chr4	25821494	G-T	HOMO	INTERGENIC
SBS	Chr4	26843121	G-A	HOMO	INTERGENIC
SBS	Chr4	27183124	G-T	HET	INTERGENIC
SBS	Chr5	17434897	G-A	HOMO	INTERGENIC
SBS	Chr5	24112106	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	17625422	C-A	HET	INTERGENIC
SBS	Chr6	18231864	T-C	HOMO	INTERGENIC
SBS	Chr6	4901032	G-T	HET	INTERGENIC
SBS	Chr6	725413	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g02260
SBS	Chr7	2858565	C-A	HET	INTERGENIC
SBS	Chr8	15323845	T-A	HET	INTRON
SBS	Chr8	3708670	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g06570
SBS	Chr8	6898529	G-A	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2960840	2960842	2
Deletion	Chr1	3784093	3784094	1	LOC_Os01g07860
Deletion	Chr4	4187104	4187108	4
Deletion	Chr7	4948604	4948605	1
Deletion	Chr10	7851291	7851292	1
Deletion	Chr4	8438412	8438414	2
Deletion	Chr2	9469851	9469860	9
Deletion	Chr1	10884004	10884006	2
Deletion	Chr1	10965276	10965277	1	LOC_Os01g19380
Deletion	Chr5	12136299	12136301	2
Deletion	Chr1	12473482	12473483	1
Deletion	Chr5	13084369	13084370	1
Deletion	Chr5	13503610	13503615	5
Deletion	Chr10	14037576	14037579	3
Deletion	Chr7	14787853	14787854	1
Deletion	Chr6	15824475	15824479	4
Deletion	Chr12	16229001	16269000	40000	5
Deletion	Chr12	16273001	16439000	166000	24
Deletion	Chr12	16447001	16603000	156000	20
Deletion	Chr12	16650001	16718000	68000	8
Deletion	Chr7	22012956	22012957	1
Deletion	Chr7	22157258	22157262	4
Deletion	Chr2	23445168	23445171	3
Deletion	Chr2	24447641	24447661	20
Deletion	Chr2	26212524	26212539	15	LOC_Os02g43430
Deletion	Chr6	28755479	28755480	1
Deletion	Chr4	29264682	29264684	2
Deletion	Chr5	29356452	29356459	7
Deletion	Chr1	42224612	42224613	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	15059864	15059865	2
Insertion	Chr11	26893782	26893785	4
Insertion	Chr12	15725335	15725335	1
Insertion	Chr2	16603861	16603890	30
Insertion	Chr2	20646139	20646139	1
Insertion	Chr2	20863338	20863338	1
Insertion	Chr2	2302902	2302903	2
Insertion	Chr3	31079944	31079944	1
Insertion	Chr5	2415907	2415907	1
Insertion	Chr5	29375624	29375624	1
Insertion	Chr5	3018536	3018536	1
Insertion	Chr6	8656154	8656168	15
Insertion	Chr7	223685	223685	1
Insertion	Chr7	27387585	27387585	1
Insertion	Chr7	9910144	9910144	1
Insertion	Chr9	19291621	19291621	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2543839	2544048
Inversion	Chr7	11237081	11237222
Inversion	Chr2	27127344	27127509
Inversion	Chr1	40741130	40741284	LOC_Os01g70330

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	16718232	Chr4	2584620

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