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| Mutant Information |
|---|
| Mutant Name | FN455-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN455-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24099431 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 29065033 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 17804720 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 14940458 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g26110 |
| SBS | Chr11 | 15882916 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 17831566 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 17831567 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 17831569 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 18644782 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr11 | 18644787 | A-C | HET | UTR_3_PRIME | |
| SBS | Chr11 | 26671416 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 1172224 | C-T | HOMO | UTR_3_PRIME | |
| SBS | Chr2 | 9259915 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g16270 |
| SBS | Chr4 | 33685799 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 29527434 | T-C | HET | UTR_3_PRIME | |
| SBS | Chr6 | 11608234 | T-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 26847322 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 11382504 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 19194586 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 17342151 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 5294694 | T-A | HET | INTRON |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 140695 | 172284 | 31589 | 8 |
| Deletion | Chr5 | 1670706 | 1672344 | 1638 | |
| Deletion | Chr12 | 1812077 | 1812080 | 3 | |
| Deletion | Chr11 | 2727298 | 2727307 | 9 | |
| Deletion | Chr12 | 2982688 | 2982690 | 2 | |
| Deletion | Chr5 | 9987001 | 10536000 | 549000 | 84 |
| Deletion | Chr8 | 10083437 | 10083452 | 15 | |
| Deletion | Chr6 | 11274930 | 11280837 | 5907 | LOC_Os06g19730 |
| Deletion | Chr7 | 13174663 | 13174664 | 1 | LOC_Os07g23370 |
| Deletion | Chr9 | 15384979 | 15386554 | 1575 | 2 |
| Deletion | Chr9 | 15913297 | 15913298 | 1 | |
| Deletion | Chr7 | 16829180 | 16829181 | 1 | LOC_Os07g28750 |
| Deletion | Chr3 | 18489721 | 18489726 | 5 | |
| Deletion | Chr8 | 22106724 | 22106801 | 77 | |
| Deletion | Chr2 | 22318420 | 22318447 | 27 | |
| Deletion | Chr12 | 22489365 | 22489366 | 1 | LOC_Os12g36720 |
| Deletion | Chr2 | 25268203 | 25268204 | 1 | |
| Deletion | Chr3 | 26096743 | 26096747 | 4 | LOC_Os03g46150 |
| Deletion | Chr3 | 26476482 | 26476485 | 3 | LOC_Os03g46820 |
| Deletion | Chr4 | 27919001 | 27939000 | 20000 | LOC_Os04g47059 |
| Deletion | Chr4 | 29453679 | 29453684 | 5 | |
| Deletion | Chr2 | 34055110 | 34055112 | 2 | |
| Deletion | Chr3 | 35794247 | 35794250 | 3 | LOC_Os03g63330 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 234871 | 234876 | 6 | |
| Insertion | Chr9 | 10407045 | 10407046 | 2 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 3144956 | 3367115 | LOC_Os07g06890 |
| Inversion | Chr3 | 15471112 | 15887955 | 2 |
| Inversion | Chr3 | 15471150 | 15887958 | 2 |
| Inversion | Chr12 | 17653665 | 17668872 | LOC_Os12g29620 |
| Inversion | Chr8 | 18334763 | 18942441 | LOC_Os08g29830 |
| Inversion | Chr5 | 21720655 | 22027002 | LOC_Os05g37170 |
| Inversion | Chr5 | 21720667 | 22027027 | LOC_Os05g37170 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 13502512 | Chr2 | 12182820 | |
| Translocation | Chr12 | 17649680 | Chr5 | 1672312 | |
| Translocation | Chr12 | 17649690 | Chr1 | 13609445 | |
| Translocation | Chr12 | 17653662 | Chr1 | 13609434 | |
| Translocation | Chr12 | 20859847 | Chr5 | 1670730 | |
| Translocation | Chr12 | 24883660 | Chr11 | 6038608 | LOC_Os12g40200 |
| Translocation | Chr8 | 28318784 | Chr5 | 5289689 | |
| Translocation | Chr5 | 29579052 | Chr2 | 950601 | LOC_Os05g51570 |
| Translocation | Chr5 | 29579056 | Chr2 | 950612 | LOC_Os05g51570 |