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Mutant Information

Mutant Name	FN4558-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4558-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	11227953	A-C	HOMO
SBS	Chr1	27827545	C-T	HOMO
SBS	Chr2	294985	A-T	HOMO
SBS	Chr2	6171450	A-G	HOMO
SBS	Chr2	7620302	T-C	HET	LOC_Os02g13965
SBS	Chr2	10615637	C-T	HET
SBS	Chr2	10615638	T-A	HET
SBS	Chr2	12691759	T-C	HET
SBS	Chr3	21001733	G-A	HET
SBS	Chr3	31427239	G-A	HOMO
SBS	Chr4	1787471	C-T	HET
SBS	Chr4	3560657	G-A	HET	LOC_Os04g06770
SBS	Chr4	7049042	G-C	HET
SBS	Chr4	8294328	C-T	HET	LOC_Os04g14780
SBS	Chr4	9537826	C-T	HET
SBS	Chr4	9608539	G-A	HET
SBS	Chr4	9756003	G-A	HET
SBS	Chr4	10246780	G-A	HET
SBS	Chr5	1145446	T-G	HET
SBS	Chr5	9303474	C-A	HOMO
SBS	Chr5	21625822	A-T	HET
SBS	Chr5	21625823	C-T	HET
SBS	Chr5	21629275	G-A	HET
SBS	Chr5	21629281	G-C	HET
SBS	Chr7	5490354	C-T	HET
SBS	Chr7	13920366	G-A	HET
SBS	Chr7	15948286	C-T	HET
SBS	Chr7	18431868	C-T	HET
SBS	Chr7	22311901	G-A	HET
SBS	Chr8	2596687	C-T	HOMO
SBS	Chr8	27709305	C-T	HOMO
SBS	Chr11	11466326	C-T	HOMO
SBS	Chr12	25209283	C-T	HOMO

Deletions: 48

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1360052	1360052	1
Deletion	Chr6	2325266	2325285	20
Deletion	Chr12	3202161	3202164	4
Deletion	Chr12	4118059	4118059	1	2
Deletion	Chr2	4694642	4694652	11	LOC_Os02g09150
Deletion	Chr12	4867976	4867984	9
Deletion	Chr12	6574801	6574814	14
Deletion	Chr6	6896103	6896106	4
Deletion	Chr3	8641568	8641569	2
Deletion	Chr5	9541719	9541725	7
Deletion	Chr10	9620001	9732000	112000	21
Deletion	Chr10	10040001	10139000	99000	14
Deletion	Chr10	10140001	10189000	49000	9
Deletion	Chr10	10141750	10141752	3	LOC_Os10g20190
Deletion	Chr10	10203001	10222000	19000	3
Deletion	Chr12	10799797	10799801	5	LOC_Os12g18690
Deletion	Chr6	11647912	11647912	1
Deletion	Chr2	11857001	11897000	40000	8
Deletion	Chr2	11931001	11943000	12000	LOC_Os02g20270
Deletion	Chr2	11931805	11931805	1
Deletion	Chr2	11987001	12182000	195000	29
Deletion	Chr6	12463161	12463161	1
Deletion	Chr5	15078765	15078784	20
Deletion	Chr10	15275069	15275073	5	LOC_Os10g29400
Deletion	Chr5	15367859	15367859	1
Deletion	Chr5	15684439	15684477	39
Deletion	Chr1	15748161	15748162	2
Deletion	Chr4	17149327	17149327	1
Deletion	Chr8	18408375	18408376	2
Deletion	Chr11	19069264	19069265	2
Deletion	Chr7	19711438	19711438	1
Deletion	Chr11	19874001	19949000	75000	7
Deletion	Chr8	20225001	20248000	23000	2
Deletion	Chr7	21059325	21059340	16	LOC_Os07g35170
Deletion	Chr6	22246308	22246308	1
Deletion	Chr1	24730001	24738000	8000
Deletion	Chr11	24809042	24809049	8
Deletion	Chr7	26050219	26050220	2
Deletion	Chr5	26338450	26338450	1
Deletion	Chr3	26404378	26404378	1
Deletion	Chr8	26700653	26700654	2
Deletion	Chr11	26769001	26798000	29000	4
Deletion	Chr2	26860301	26860301	1
Deletion	Chr11	26963001	26975000	12000	2
Deletion	Chr6	28021616	28021617	2
Deletion	Chr4	29551232	29551347	116
Deletion	Chr2	30232482	30232482	1	LOC_Os02g49470
Deletion	Chr4	34987520	34987520	1

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	36829472	36829555	84
Insertion	Chr1	38858773	38858773	1
Insertion	Chr3	25458327	25458348	22
Insertion	Chr4	8643646	8643649	4
Insertion	Chr4	26783425	26783425	1
Insertion	Chr5	12452205	12452205	1
Insertion	Chr8	16259642	16259728	87
Insertion	Chr8	17910649	17910669	21
Insertion	Chr8	17953930	17954041	112
Insertion	Chr8	19268840	19268844	5
Insertion	Chr9	8244079	8244079	1
Insertion	Chr10	4012148	4012160	13
Insertion	Chr10	5220373	5220456	84
Insertion	Chr12	21483587	21483605	19
Insertion	Chr6	26520522	26520522	1
Insertion	Chr7	26396949	26396950	2
Insertion	Chr9	19451436	19451436	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	26769352	26963126
Inversion	Chr11	26798162	26975002	LOC_Os11g44600

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3169143	Chr8	16573930
Translocation	Chr10	4295681	Chr7	12835042	LOC_Os07g22740
Translocation	Chr10	4295685	Chr7	12836552	LOC_Os07g22740
Translocation	Chr11	26797846	Chr7	8679376	LOC_Os11g44340
Translocation	Chr11	26798150	Chr7	8679375

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