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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2600344	G-C	HET	INTRON
SBS	Chr1	7722633	T-G	HET	INTERGENIC
SBS	Chr1	19857876	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35860
SBS	Chr1	28962461	C-T	HOMO	INTERGENIC
SBS	Chr2	3161237	G-A	HET	INTERGENIC
SBS	Chr2	3161238	C-A	HET	INTERGENIC
SBS	Chr2	4555036	T-A	HET	INTERGENIC
SBS	Chr2	15935660	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g27110
SBS	Chr2	18371424	G-A	HET	INTERGENIC
SBS	Chr2	27350930	T-A	HET	INTERGENIC
SBS	Chr2	27350931	G-A	HET	INTERGENIC
SBS	Chr2	35286640	T-G	HET	INTERGENIC
SBS	Chr3	6927330	G-T	HET	INTERGENIC
SBS	Chr3	24488907	G-T	HET	SYNONYMOUS_CODING
SBS	Chr3	25251888	A-T	HET	STOP_GAINED	LOC_Os03g44780
SBS	Chr3	28984926	A-G	HOMO	INTERGENIC
SBS	Chr3	34527297	T-A	HET	INTRON
SBS	Chr3	34527298	C-A	HET	INTRON
SBS	Chr4	9082998	C-T	HOMO	INTERGENIC
SBS	Chr4	9925561	A-G	HOMO	INTERGENIC
SBS	Chr4	17881431	G-T	HOMO	INTERGENIC
SBS	Chr4	27476143	C-G	HET	INTERGENIC
SBS	Chr4	30276368	G-T	HET	INTERGENIC
SBS	Chr5	15772829	T-A	HOMO	INTRON
SBS	Chr5	18522639	T-A	HOMO	INTERGENIC
SBS	Chr6	9388789	G-A	HET	INTERGENIC
SBS	Chr7	4194003	A-C	HOMO	INTRON
SBS	Chr7	14637525	C-T	HOMO	INTERGENIC
SBS	Chr8	9156339	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g15120
SBS	Chr9	9549556	T-C	HET	INTERGENIC
SBS	Chr9	19405645	C-T	HET	INTERGENIC
SBS	Chr9	21053815	C-G	HET	UTR_3_PRIME
SBS	Chr10	4351344	G-A	HET	INTERGENIC
SBS	Chr10	8506780	A-G	HET	UTR_3_PRIME
SBS	Chr11	4783224	A-T	HOMO	INTERGENIC
SBS	Chr11	9582746	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g17200
SBS	Chr11	11685467	T-A	HOMO	UTR_3_PRIME
SBS	Chr11	16225391	A-G	HET	INTERGENIC
SBS	Chr11	24763424	G-A	HOMO	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1234225	1234226	1
Deletion	Chr12	2269355	2269364	9
Deletion	Chr1	2338688	2338689	1
Deletion	Chr3	2391984	2391985	1
Deletion	Chr10	4565997	4566001	4
Deletion	Chr12	6685564	6685566	2	LOC_Os12g12180
Deletion	Chr9	6760203	6760209	6	LOC_Os09g12000
Deletion	Chr4	9935179	9935183	4
Deletion	Chr11	11501358	11501359	1
Deletion	Chr1	13229786	13229793	7	LOC_Os01g23560
Deletion	Chr4	13435277	13435285	8
Deletion	Chr6	14215155	14215156	1
Deletion	Chr7	14366001	14383000	17000	2
Deletion	Chr6	14670413	14670437	24
Deletion	Chr12	14920838	14920850	12
Deletion	Chr6	14964001	15061000	97000	22
Deletion	Chr6	15081001	15109000	28000	5
Deletion	Chr7	15083234	15083237	3
Deletion	Chr7	16657740	16657741	1
Deletion	Chr11	19049862	19049865	3
Deletion	Chr4	19122096	19122102	6
Deletion	Chr1	19937879	19937881	2
Deletion	Chr11	20624971	20624972	1	LOC_Os11g35160
Deletion	Chr2	22550444	22550445	1
Deletion	Chr2	23351549	23351553	4
Deletion	Chr8	27625588	27625590	2
Deletion	Chr5	29664552	29664553	1
Deletion	Chr4	30654714	30654715	1

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12153934	12153934	1
Insertion	Chr2	23044425	23044425	1
Insertion	Chr6	382773	382774	2
Insertion	Chr6	21044257	21044257	1
Insertion	Chr7	28875945	28875945	1
Insertion	Chr12	3017790	3017791	2
Insertion	Chr1	30751617	30751617	1
Insertion	Chr1	32653945	32653945	1
Insertion	Chr2	12008374	12008374	1
Insertion	Chr3	5313555	5313555	1
Insertion	Chr3	31883446	31883446	1
Insertion	Chr4	11977217	11977217	1
Insertion	Chr4	19996598	19996662	65
Insertion	Chr5	666158	666199	42
Insertion	Chr6	11000810	11000810	1
Insertion	Chr8	6699925	6699925	1
Insertion	Chr9	11628874	11628944	71
Insertion	Chr10	5961239	5961239	1
Insertion	Chr12	4835162	4835163	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	29535991	30520969	2
Inversion	Chr3	31073901	31169887

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	9045833	Chr2	15080072	LOC_Os02g15950
Translocation	Chr10	12017585	Chr6	13843614	LOC_Os10g23050
Translocation	Chr10	12017733	Chr6	15108779	LOC_Os10g23050
Translocation	Chr12	20230683	Chr2	24154289

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