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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16224498	C-T	HET	INTERGENIC
SBS	Chr1	28566540	A-T	HET	INTERGENIC
SBS	Chr1	30479227	A-G	HET	INTERGENIC
SBS	Chr1	36646900	T-C	HOMO	UTR_3_PRIME
SBS	Chr1	40685653	T-A	HOMO	INTERGENIC
SBS	Chr10	16558249	A-G	HET	SYNONYMOUS_CODING
SBS	Chr10	19772327	A-G	HET	INTERGENIC
SBS	Chr10	20120036	T-A	HET	INTERGENIC
SBS	Chr10	22785591	T-A	HET	INTERGENIC
SBS	Chr10	5486005	T-A	HOMO	INTERGENIC
SBS	Chr11	26532652	T-C	HET	INTERGENIC
SBS	Chr11	28344190	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g47130
SBS	Chr12	14554936	G-A	HOMO	INTERGENIC
SBS	Chr12	17719998	A-C	HET	SYNONYMOUS_CODING
SBS	Chr12	19509480	G-T	HOMO	INTRON
SBS	Chr12	27166873	G-C	HET	UTR_3_PRIME
SBS	Chr12	5360423	G-A	HET	INTERGENIC
SBS	Chr12	8954890	G-T	HOMO	INTRON
SBS	Chr2	15240744	G-A	HOMO	INTERGENIC
SBS	Chr3	302620	T-A	HOMO	INTERGENIC
SBS	Chr3	34394612	T-G	HET	SYNONYMOUS_CODING
SBS	Chr3	34885316	G-A	HET	INTERGENIC
SBS	Chr4	10792584	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	12122074	C-T	HOMO	INTERGENIC
SBS	Chr4	24957348	T-A	HET	INTERGENIC
SBS	Chr4	24957349	T-A	HET	INTERGENIC
SBS	Chr4	25260359	T-C	HET	INTERGENIC
SBS	Chr4	31189258	T-G	HET	INTRON
SBS	Chr5	16500579	T-C	HET	INTERGENIC
SBS	Chr5	17276253	T-A	HET	INTERGENIC
SBS	Chr5	8766577	C-T	HOMO	INTERGENIC
SBS	Chr6	2646026	G-A	HET	STOP_GAINED	LOC_Os06g05810
SBS	Chr6	8644248	A-T	HET	INTERGENIC
SBS	Chr7	14026266	C-T	HOMO	INTERGENIC
SBS	Chr7	20823905	C-T	HET	INTERGENIC
SBS	Chr8	10987891	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g17910
SBS	Chr8	12594922	G-C	HET	INTERGENIC
SBS	Chr8	20203369	A-T	HET	INTERGENIC
SBS	Chr8	2224660	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g04510
SBS	Chr8	25324692	C-T	HET	INTRON
SBS	Chr9	10051383	T-C	HET	INTRON
SBS	Chr9	2157199	T-G	HET	SYNONYMOUS_CODING

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	128203	128204	1
Deletion	Chr4	1663426	1663429	3
Deletion	Chr1	4383867	4383875	8
Deletion	Chr4	7870928	7870934	6
Deletion	Chr9	12089095	12089097	2
Deletion	Chr9	12979740	12979742	2
Deletion	Chr9	13358519	13358523	4
Deletion	Chr12	13744001	13769000	25000	3
Deletion	Chr1	13951963	13951964	1
Deletion	Chr2	15158254	15158285	31
Deletion	Chr8	16067469	16067470	1
Deletion	Chr2	16212042	16212053	11
Deletion	Chr8	17218170	17218178	8
Deletion	Chr10	18826146	18826149	3
Deletion	Chr8	19213259	19213265	6
Deletion	Chr4	20574010	20574011	1
Deletion	Chr3	20854070	20854073	3
Deletion	Chr6	22364871	22364883	12	LOC_Os06g37790
Deletion	Chr3	22465835	22465846	11
Deletion	Chr6	23016897	23016898	1
Deletion	Chr2	24844454	24844460	6
Deletion	Chr11	25276001	25406000	130000	15
Deletion	Chr11	25417001	25594000	177000	30
Deletion	Chr7	28438382	28438383	1
Deletion	Chr4	30333426	30333431	5
Deletion	Chr1	30932584	30932589	5
Deletion	Chr1	31156980	31156984	4
Deletion	Chr2	32555287	32555301	14
Deletion	Chr2	34973929	34973933	4
Deletion	Chr2	35861889	35861890	1
Deletion	Chr1	38407838	38407851	13

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	25813217	25813220	4
Insertion	Chr4	8411775	8411775	1
Insertion	Chr5	2567681	2567682	2
Insertion	Chr8	20502371	20502371	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	677330	13216940
Inversion	Chr11	5603295	25593863	LOC_Os11g42500
Inversion	Chr11	5603538	25261252	LOC_Os11g42000
Inversion	Chr6	6451422	6473547	LOC_Os06g12080
Inversion	Chr6	10366408	14738921	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16229027	Chr1	42158279
Translocation	Chr11	16997659	Chr2	474828
Translocation	Chr7	21204845	Chr6	8411333
Translocation	Chr12	23184050	Chr10	17400433	2
Translocation	Chr12	26150514	Chr2	16427021	LOC_Os02g27740
Translocation	Chr11	28162517	Chr5	14142168	LOC_Os11g46880
Translocation	Chr8	28319003	Chr5	5289576
Translocation	Chr4	34006298	Chr3	18216873	LOC_Os03g31839

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