Search Results

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14125077	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25040
SBS	Chr1	14583727	G-A	HET	INTERGENIC
SBS	Chr1	22390501	A-C	HET	INTERGENIC
SBS	Chr3	24207819	A-G	HOMO	INTERGENIC
SBS	Chr3	25424579	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g45050
SBS	Chr4	1536115	G-T	HOMO	INTRON
SBS	Chr4	6641555	G-A	HET	INTERGENIC
SBS	Chr4	35190251	G-A	HOMO	INTERGENIC
SBS	Chr5	12009050	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g20460
SBS	Chr5	15659988	T-A	HOMO	INTRON
SBS	Chr5	21183533	A-G	HOMO	INTRON
SBS	Chr5	22966648	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g39160
SBS	Chr5	29688059	T-C	HOMO	INTERGENIC
SBS	Chr6	919068	T-C	HET	INTRON
SBS	Chr6	28545278	A-G	HOMO	INTERGENIC
SBS	Chr7	2977444	C-T	HET	INTERGENIC
SBS	Chr7	6588263	C-T	HET	INTERGENIC
SBS	Chr7	27571390	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46190
SBS	Chr8	2655604	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	3545034	C-A	HET	SYNONYMOUS_CODING
SBS	Chr8	20417932	A-C	HET	SPLICE_SITE_REGION
SBS	Chr10	4728911	T-A	HET	INTERGENIC
SBS	Chr10	6340163	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11454
SBS	Chr10	20294995	G-C	HET	INTRON
SBS	Chr11	10291499	G-T	HET	INTRON
SBS	Chr11	13507607	G-T	HET	INTERGENIC
SBS	Chr11	22536539	C-G	HET	UTR_3_PRIME
SBS	Chr11	23305864	G-A	HET	INTERGENIC
SBS	Chr12	5579252	C-T	HET	INTERGENIC
SBS	Chr12	6603085	C-T	HET	INTERGENIC
SBS	Chr12	12735796	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22560
SBS	Chr12	13770374	C-A	HET	INTRON
SBS	Chr12	25083703	G-C	HET	SYNONYMOUS_CODING

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2999553	2999554	1
Deletion	Chr5	4474970	4474972	2
Deletion	Chr9	4682623	4682641	18	LOC_Os09g08860
Deletion	Chr9	5805533	5805534	1
Deletion	Chr9	5891285	5891286	1
Deletion	Chr8	6771211	6771212	1
Deletion	Chr9	8253070	8253071	1
Deletion	Chr8	8739977	8739978	1
Deletion	Chr5	9005281	9005286	5
Deletion	Chr5	10342407	10342413	6
Deletion	Chr6	11354075	11354076	1
Deletion	Chr11	14972928	14972929	1
Deletion	Chr7	15083740	15083768	28
Deletion	Chr9	18988943	18988955	12	LOC_Os09g31486
Deletion	Chr6	19429695	19429706	11	LOC_Os06g33350
Deletion	Chr11	20039687	20039689	2
Deletion	Chr11	20635001	20663000	28000	5
Deletion	Chr1	22767073	22767075	2
Deletion	Chr12	24971645	24971646	1
Deletion	Chr4	26414689	26414690	1
Deletion	Chr1	26582459	26582461	2
Deletion	Chr6	27934696	27934701	5	LOC_Os06g46070
Deletion	Chr4	30671001	30890000	219000	29
Deletion	Chr4	30895001	31206000	311000	41
Deletion	Chr3	34655914	34655915	1
Deletion	Chr4	35038835	35038842	7

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	1784702	1784702	1
Insertion	Chr10	14271920	14271920	1
Insertion	Chr1	35491259	35491264	6
Insertion	Chr2	12254823	12254824	2
Insertion	Chr2	18680854	18680854	1	LOC_Os02g31190
Insertion	Chr2	21913119	21913119	1	LOC_Os02g36290
Insertion	Chr4	2658320	2658320	1
Insertion	Chr4	2767186	2767188	3
Insertion	Chr5	8165201	8165216	16
Insertion	Chr5	12367664	12367666	3	LOC_Os05g21020
Insertion	Chr5	15388851	15388852	2
Insertion	Chr6	850515	850515	1
Insertion	Chr6	8170445	8170450	6
Insertion	Chr7	1406972	1406972	1	LOC_Os07g03520
Insertion	Chr12	5511207	5511214	8
Insertion	Chr12	7850625	7850636	12
Insertion	Chr12	11539103	11539103	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	24278524	24525330
Inversion	Chr5	24278527	24525334
Inversion	Chr2	34963256	35535811	LOC_Os02g58040
Inversion	Chr2	34963294	35535852	LOC_Os02g58040

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	28904022	Chr1	26271178	LOC_Os04g48484
Translocation	Chr4	28904025	Chr1	26271292	LOC_Os04g48484

Main menu