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Mutant Information

Mutant Name	FN4592-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4592-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 51

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24054246	C-T	HET	SPLICE_SITE_REGION
SBS	Chr1	34860562	A-G	HET	INTERGENIC
SBS	Chr1	4090441	A-G	HOMO	INTERGENIC
SBS	Chr11	12737587	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g22190
SBS	Chr11	7573790	T-A	HOMO	INTERGENIC
SBS	Chr12	10622806	G-A	HET	INTERGENIC
SBS	Chr12	12668133	T-C	HOMO	INTERGENIC
SBS	Chr12	18044659	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g30120
SBS	Chr12	23358334	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g38020
SBS	Chr12	23358335	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g38020
SBS	Chr12	4009772	T-A	HET	INTRON
SBS	Chr2	18018446	A-G	HET	INTRON
SBS	Chr2	18053437	G-T	HET	INTERGENIC
SBS	Chr2	18901490	G-C	HET	INTRON
SBS	Chr2	24870820	A-C	HET	INTERGENIC
SBS	Chr2	25747659	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g42840
SBS	Chr2	4685653	C-G	HET	INTRON
SBS	Chr2	4685655	A-G	HET	INTRON
SBS	Chr2	8024890	G-A	HET	SPLICE_SITE_REGION
SBS	Chr3	10799270	A-T	HET	INTERGENIC
SBS	Chr3	13451929	C-T	HET	INTRON
SBS	Chr3	19002935	G-A	HET	STOP_GAINED	LOC_Os03g33230
SBS	Chr3	23148688	A-G	HET	INTERGENIC
SBS	Chr3	5406896	T-C	HET	UTR_3_PRIME
SBS	Chr3	6276381	T-C	HET	INTRON
SBS	Chr3	6371457	C-T	HET	UTR_5_PRIME
SBS	Chr4	3017941	A-G	HET	INTERGENIC
SBS	Chr4	33034017	G-A	HET	INTERGENIC
SBS	Chr4	7496500	G-A	HOMO	INTERGENIC
SBS	Chr5	11213760	T-C	HET	INTERGENIC
SBS	Chr5	24401489	G-A	HET	INTERGENIC
SBS	Chr5	25165963	C-T	HET	UTR_5_PRIME
SBS	Chr5	27653724	C-T	HET	INTERGENIC
SBS	Chr5	28767982	A-C	HET	INTRON
SBS	Chr5	3647749	G-A	HOMO	INTRON
SBS	Chr5	766869	G-A	HOMO	INTERGENIC
SBS	Chr6	17502866	C-T	HET	INTERGENIC
SBS	Chr6	17800376	T-G	HET	INTRON
SBS	Chr6	18129913	A-G	HET	INTERGENIC
SBS	Chr6	24010704	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g40330
SBS	Chr6	26384691	G-A	HET	INTERGENIC
SBS	Chr6	4692483	G-C	HOMO	INTRON
SBS	Chr7	11693880	G-A	HET	INTRON
SBS	Chr7	16461582	G-A	HET	INTERGENIC
SBS	Chr7	21828487	G-A	HET	INTRON
SBS	Chr7	22177919	G-A	HET	INTERGENIC
SBS	Chr7	5932343	G-T	HET	INTRON
SBS	Chr8	19402890	A-C	HET	INTERGENIC
SBS	Chr8	7401840	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12500
SBS	Chr9	20880034	C-A	HET	INTERGENIC
SBS	Chr9	4699418	G-A	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	801264	801265	1
Deletion	Chr8	1023330	1023341	11
Deletion	Chr4	1140548	1140550	2
Deletion	Chr3	1252886	1252887	1
Deletion	Chr11	1843223	1843253	30	LOC_Os11g04420
Deletion	Chr9	4925001	4936000	11000	2
Deletion	Chr9	8845257	8845258	1
Deletion	Chr2	9166356	9166357	1
Deletion	Chr7	9346322	9346324	2
Deletion	Chr6	9471488	9471489	1
Deletion	Chr8	11180954	11181019	65	LOC_Os08g18730
Deletion	Chr1	11368922	11368923	1
Deletion	Chr12	13484099	13484100	1
Deletion	Chr1	14254043	14254074	31
Deletion	Chr8	14658478	14658509	31
Deletion	Chr2	14730535	14730537	2
Deletion	Chr6	15902980	15902981	1
Deletion	Chr12	16223001	16563000	340000	46
Deletion	Chr5	18612631	18612633	2
Deletion	Chr6	18637639	18637640	1
Deletion	Chr3	19443227	19443228	1
Deletion	Chr7	23175571	23175577	6
Deletion	Chr4	23215722	23215725	3
Deletion	Chr6	26358240	26358249	9
Deletion	Chr12	27150281	27150296	15
Deletion	Chr1	35281008	35281009	1
Deletion	Chr1	36608886	36608887	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1301058	1301058	1
Insertion	Chr10	15560826	15560826	1
Insertion	Chr11	25275166	25275185	20
Insertion	Chr12	16305149	16305149	1
Insertion	Chr3	4248171	4248171	1
Insertion	Chr4	11369937	11369962	26	LOC_Os04g20320
Insertion	Chr6	20321735	20321736	2
Insertion	Chr6	22816352	22816352	1
Insertion	Chr6	3688837	3688837	1
Insertion	Chr7	10609919	10609919	1
Insertion	Chr7	12477071	12477071	1
Insertion	Chr7	20897791	20897791	1
Insertion	Chr8	26348950	26348950	1
Insertion	Chr8	7126105	7126105	1
Insertion	Chr9	8116599	8116599	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr10	5255646	5898156
Inversion	Chr11	9746822	10144397
Inversion	Chr11	9746827	10144401

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5018267	Chr7	27449005	LOC_Os07g09510
Translocation	Chr8	5018307	Chr7	27449005	LOC_Os07g09510
Translocation	Chr10	5898154	Chr8	19840485
Translocation	Chr10	7101348	Chr8	19840482
Translocation	Chr12	23889236	Chr2	34925368	LOC_Os02g39570
Translocation	Chr12	23889239	Chr2	34924047	LOC_Os02g39570

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