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Mutant Information

Mutant Name	FN4593-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4593-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	49483	C-T	HET	INTRON
SBS	Chr1	4732351	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g09305
SBS	Chr1	14002596	C-G	HET	STOP_GAINED	LOC_Os01g24860
SBS	Chr1	29237735	A-T	HET	INTERGENIC
SBS	Chr1	32147874	G-A	HET	INTERGENIC
SBS	Chr1	37483809	G-A	HET	INTERGENIC
SBS	Chr2	10689479	C-T	HET	INTERGENIC
SBS	Chr3	2926696	A-G	HET	INTRON
SBS	Chr3	7837705	G-T	HET	STOP_GAINED	LOC_Os03g14410
SBS	Chr3	7837706	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g14410
SBS	Chr3	18742333	C-G	HET	INTERGENIC
SBS	Chr3	19845978	C-A	HET	INTERGENIC
SBS	Chr3	27050798	T-A	HET	INTERGENIC
SBS	Chr3	35894609	T-A	HET	INTERGENIC
SBS	Chr4	4967720	T-C	HET	INTRON
SBS	Chr4	6809689	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12340
SBS	Chr4	11752493	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	13452447	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23520
SBS	Chr4	13548383	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	15965200	A-G	HET	INTERGENIC
SBS	Chr4	29884868	A-G	HOMO	START_GAINED
SBS	Chr5	28299404	C-T	HET	UTR_3_PRIME
SBS	Chr5	28299405	G-T	HET	UTR_3_PRIME
SBS	Chr5	28299406	A-T	HET	UTR_3_PRIME
SBS	Chr6	2710292	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05920
SBS	Chr6	21756477	T-C	HOMO	INTRON
SBS	Chr7	6887092	C-A	HET	INTRON
SBS	Chr7	6887093	A-G	HET	INTRON
SBS	Chr7	14098972	C-T	HET	INTRON
SBS	Chr7	21272723	A-G	HET	INTERGENIC
SBS	Chr7	25913627	G-A	HET	INTERGENIC
SBS	Chr7	26047518	T-C	HET	INTERGENIC
SBS	Chr8	6020906	T-A	HET	SPLICE_SITE_REGION
SBS	Chr8	7895571	C-A	HET	SYNONYMOUS_CODING
SBS	Chr8	12968546	C-A	HET	INTERGENIC
SBS	Chr8	26411402	T-C	HET	INTERGENIC
SBS	Chr9	1711539	G-C	HET	SYNONYMOUS_CODING
SBS	Chr9	16196216	G-T	HET	INTRON
SBS	Chr10	3955438	G-A	HET	INTRON
SBS	Chr10	10075169	C-T	HET	INTERGENIC
SBS	Chr11	4475186	C-T	HOMO	INTERGENIC
SBS	Chr11	18316864	A-G	HET	INTRON
SBS	Chr12	1700187	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	25866858	T-G	HET	INTERGENIC
SBS	Chr12	27383223	T-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1104389	1104390	1
Deletion	Chr5	1440475	1440477	2
Deletion	Chr8	2724643	2724644	1
Deletion	Chr8	5824609	5824611	2
Deletion	Chr7	6344668	6344673	5
Deletion	Chr2	10522458	10522463	5
Deletion	Chr4	10630833	10630834	1
Deletion	Chr12	11252001	11272000	20000	2
Deletion	Chr12	11290001	11331000	41000	5
Deletion	Chr6	12208940	12208941	1
Deletion	Chr8	15396706	15396707	1
Deletion	Chr2	17034940	17035035	95
Deletion	Chr11	18799919	18799921	2	LOC_Os11g31970
Deletion	Chr9	18823226	18823227	1
Deletion	Chr8	19271780	19271781	1
Deletion	Chr5	21261806	21261807	1
Deletion	Chr11	22074866	22074871	5
Deletion	Chr10	22292810	22292814	4
Deletion	Chr12	22999369	22999374	5
Deletion	Chr4	30825491	30825578	87
Deletion	Chr3	35706001	35723000	17000	4
Deletion	Chr3	35726001	35733000	7000	3

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16199954	16199954	1
Insertion	Chr4	10817734	10817734	1
Insertion	Chr5	19153826	19153850	25
Insertion	Chr5	26747253	26747253	1
Insertion	Chr6	10982955	10982955	1	LOC_Os06g19310
Insertion	Chr6	29215735	29215735	1
Insertion	Chr7	6535574	6535574	1
Insertion	Chr7	27342456	27342458	3	LOC_Os07g45810
Insertion	Chr9	6149586	6149604	19
Insertion	Chr9	7293226	7293301	76
Insertion	Chr12	1803275	1803275	1
Insertion	Chr12	8491249	8491249	1
Insertion	Chr12	19681170	19681170	1
Insertion	Chr12	23863284	23863289	6

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	20615608	20983158
Inversion	Chr9	20985741	21027042	LOC_Os09g36360
Inversion	Chr8	21065454	21065870
Inversion	Chr3	27051204	27295370	LOC_Os03g47730
Inversion	Chr3	27051214	27295379	LOC_Os03g47730
Inversion	Chr1	31606402	31606567
Inversion	Chr3	35265592	35706611

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	20983160	Chr4	29253461
Translocation	Chr9	20985731	Chr4	29253460	LOC_Os09g36360

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