Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10587294	C-T	HET	INTERGENIC
SBS	Chr1	5602865	T-C	HET	INTERGENIC
SBS	Chr1	5958846	G-A	HET	INTERGENIC
SBS	Chr10	10043080	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g20020
SBS	Chr10	1820324	A-T	HOMO	INTERGENIC
SBS	Chr10	7750456	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g14795
SBS	Chr10	9029743	T-G	HET	INTERGENIC
SBS	Chr11	15186049	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26490
SBS	Chr11	17833607	G-T	HOMO	INTERGENIC
SBS	Chr12	1702520	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04050
SBS	Chr12	9285107	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g16230
SBS	Chr2	11838832	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	30036708	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g49120
SBS	Chr3	15848132	A-T	HET	INTERGENIC
SBS	Chr3	15848134	C-G	HET	INTERGENIC
SBS	Chr3	23113720	G-A	HET	INTERGENIC
SBS	Chr3	25382334	A-C	HET	INTERGENIC
SBS	Chr4	6036445	T-C	HET	INTRON
SBS	Chr5	1104122	A-C	HOMO	INTRON
SBS	Chr5	12834837	T-C	HOMO	INTRON
SBS	Chr5	18661103	C-A	HET	INTERGENIC
SBS	Chr5	22209474	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	11859588	A-G	HET	INTERGENIC
SBS	Chr6	16291221	C-T	HET	INTERGENIC
SBS	Chr6	24647684	T-C	HET	INTERGENIC
SBS	Chr6	29516905	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g48770
SBS	Chr6	29516906	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g48770
SBS	Chr7	14058264	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g24710
SBS	Chr7	16693543	C-T	HOMO	INTERGENIC
SBS	Chr7	25385984	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	27246669	G-A	HET	SPLICE_SITE_REGION
SBS	Chr8	25630710	A-T	HET	INTERGENIC
SBS	Chr9	1232178	C-A	HET	INTRON
SBS	Chr9	13090259	G-A	HOMO	INTERGENIC
SBS	Chr9	13093846	G-C	HOMO	INTERGENIC
SBS	Chr9	13093848	G-A	HOMO	INTERGENIC
SBS	Chr9	3709162	T-G	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	4654509	4654510	1
Deletion	Chr1	6103001	6401000	298000	42
Deletion	Chr9	6285092	6285098	6	LOC_Os09g11320
Deletion	Chr8	6963019	6963020	1
Deletion	Chr9	8464435	8464436	1
Deletion	Chr6	9304704	9304708	4
Deletion	Chr5	9456893	9456898	5
Deletion	Chr10	9991001	10035000	44000	9
Deletion	Chr5	10498656	10498677	21
Deletion	Chr2	11150894	11150899	5
Deletion	Chr11	12121961	12121962	1
Deletion	Chr2	16459247	16459314	67
Deletion	Chr3	16752683	16752686	3
Deletion	Chr8	17432896	17432897	1
Deletion	Chr7	21549231	21549233	2
Deletion	Chr2	22204172	22204176	4	LOC_Os02g36810
Deletion	Chr6	24481278	24481279	1
Deletion	Chr8	25298963	25298964	1
Deletion	Chr11	25740024	25740027	3
Deletion	Chr4	33575297	33575309	12
Deletion	Chr3	35622536	35622539	3	LOC_Os03g63000
Deletion	Chr1	41251001	41272000	21000	LOC_Os01g71300

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	5026126	5026127	2
Insertion	Chr10	8574604	8574604	1
Insertion	Chr11	27727426	27727503	78
Insertion	Chr11	9987092	9987139	48
Insertion	Chr12	11689896	11689896	1
Insertion	Chr12	16228871	16228871	1
Insertion	Chr3	16385110	16385111	2
Insertion	Chr4	14963109	14963109	1
Insertion	Chr4	9253174	9253174	1	LOC_Os04g16910
Insertion	Chr7	28867623	28867623	1
Insertion	Chr8	12438243	12438243	1
Insertion	Chr8	17372438	17372439	2
Insertion	Chr8	28032789	28032789	1
Insertion	Chr9	14464181	14464181	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	10218202	10532432	LOC_Os01g18240
Inversion	Chr1	10218211	10532438	LOC_Os01g18240
Inversion	Chr12	24512866	24860885
Inversion	Chr1	24760063	24760234

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	20216144	Chr1	42529151	LOC_Os01g36420

Main menu