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Mutant Information

Mutant Name	FN463-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN463-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Very Low (below 24% compare to WT) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Very Low (Below 24%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3084578	G-C	HET	INTERGENIC
SBS	Chr1	23457457	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g41430
SBS	Chr2	14865767	C-T	HOMO	UTR_3_PRIME
SBS	Chr2	28612113	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g46900
SBS	Chr3	18617610	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g32550
SBS	Chr4	3717298	C-T	HOMO	INTERGENIC
SBS	Chr4	6527983	C-T	HOMO	INTERGENIC
SBS	Chr4	8410477	G-C	HOMO	INTRON
SBS	Chr4	9774406	G-T	HOMO	INTERGENIC
SBS	Chr4	30970634	A-G	HET	INTERGENIC
SBS	Chr5	1134223	G-A	HET	INTERGENIC
SBS	Chr5	3963512	G-A	HET	INTERGENIC
SBS	Chr5	5240822	A-T	HET	INTRON
SBS	Chr6	662214	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g02180
SBS	Chr6	9417074	C-T	HET	INTERGENIC
SBS	Chr6	19987057	C-T	HET	INTERGENIC
SBS	Chr7	10740291	A-T	HOMO	INTRON
SBS	Chr8	4946839	T-C	HOMO	INTERGENIC
SBS	Chr9	13507158	A-T	HET	STOP_GAINED	LOC_Os09g22350
SBS	Chr9	20772002	T-A	HET	INTERGENIC
SBS	Chr10	14284105	G-A	HOMO	INTRON
SBS	Chr11	1344204	A-T	HOMO	INTRON
SBS	Chr11	11403867	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19790
SBS	Chr11	23816458	G-A	HOMO	INTERGENIC
SBS	Chr11	26488069	C-T	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	757132	757143	11	LOC_Os04g02200
Deletion	Chr3	1149173	1149174	1
Deletion	Chr6	1976733	1976742	9
Deletion	Chr2	3160334	3160344	10
Deletion	Chr1	3983666	3983668	2
Deletion	Chr6	4385463	4385464	1
Deletion	Chr5	4620173	4620174	1
Deletion	Chr6	6665112	6665286	174
Deletion	Chr8	7134709	7134723	14
Deletion	Chr3	9984618	9984623	5
Deletion	Chr4	10992651	10992655	4
Deletion	Chr8	11997001	12186000	189000	25
Deletion	Chr8	12749378	12749387	9	LOC_Os08g21370
Deletion	Chr5	13221070	13221071	1
Deletion	Chr11	16721039	16721052	13	LOC_Os11g28890
Deletion	Chr11	16975423	16975424	1
Deletion	Chr1	18048558	18048570	12
Deletion	Chr5	18952402	18952918	516
Deletion	Chr3	21439493	21439494	1
Deletion	Chr3	23525990	23526004	14	LOC_Os03g42280
Deletion	Chr4	27753065	27753066	1
Deletion	Chr6	29570001	29674000	104000	12
Deletion	Chr2	30931085	30931088	3
Deletion	Chr1	31302733	31313407	10674	3
Deletion	Chr1	37002017	37002031	14
Deletion	Chr1	37482507	37482536	29

No Insertion

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2922898	4345010	LOC_Os04g08160

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3116636	Chr1	18624993
Translocation	Chr8	10754430	Chr6	19260586	LOC_Os08g17580
Translocation	Chr6	11605846	Chr5	6870523
Translocation	Chr10	13764671	Chr2	29617601
Translocation	Chr6	16643523	Chr4	35498746	LOC_Os06g29170
Translocation	Chr6	23536140	Chr4	25757777

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