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Mutant Information

Mutant Name	FN4713-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4713-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	26382027	C-T	HOMO
SBS	Chr1	31418870	G-A	HOMO
SBS	Chr1	9956968	T-C	HET
SBS	Chr10	10042021	G-A	HET	LOC_Os10g20020
SBS	Chr10	10274441	C-A	HET	LOC_Os10g20430
SBS	Chr10	3075284	G-T	HET	LOC_Os10g06050
SBS	Chr10	5588025	G-A	HET
SBS	Chr10	5588026	G-A	HET
SBS	Chr11	19157316	T-G	HET
SBS	Chr11	26157080	T-G	HET
SBS	Chr11	2695005	C-T	HOMO
SBS	Chr11	8088490	T-A	HOMO
SBS	Chr11	9882198	G-A	HOMO
SBS	Chr12	12766914	T-A	HET
SBS	Chr12	13390311	A-G	HET
SBS	Chr12	18132738	A-G	HET	LOC_Os12g30214
SBS	Chr2	23780566	C-T	HET
SBS	Chr2	29753512	G-T	HOMO	LOC_Os02g48600
SBS	Chr2	31638520	T-A	HET
SBS	Chr2	9032663	G-A	HET
SBS	Chr2	9637938	G-A	HET
SBS	Chr3	1258553	G-C	HET
SBS	Chr3	13352380	C-T	HET
SBS	Chr3	19746790	C-T	HET
SBS	Chr3	28019982	A-G	HET
SBS	Chr3	30930177	C-A	HET
SBS	Chr3	5706489	T-C	HET
SBS	Chr3	8115768	T-C	HET	LOC_Os03g14890
SBS	Chr4	1567259	C-T	HET
SBS	Chr4	32920847	G-A	HET
SBS	Chr4	7738494	A-G	HET
SBS	Chr5	11988951	G-A	HET	LOC_Os05g20430
SBS	Chr5	18878436	G-A	HET
SBS	Chr5	23719110	C-T	HET
SBS	Chr5	3181001	C-T	HOMO
SBS	Chr5	9675794	A-T	HET
SBS	Chr6	2105360	C-T	HET
SBS	Chr6	2550402	A-T	HET
SBS	Chr6	8806842	A-G	HET
SBS	Chr7	6049226	C-A	HET
SBS	Chr7	6555418	T-A	HET
SBS	Chr8	12548349	G-C	HET	LOC_Os08g20952
SBS	Chr8	24708410	T-A	HET
SBS	Chr8	27975666	C-T	HET
SBS	Chr8	9315264	C-T	HET
SBS	Chr9	1436905	C-G	HET
SBS	Chr9	9676857	G-T	HOMO

Deletions: 176

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	63054	63055	2
Deletion	Chr6	102613	102635	23
Deletion	Chr11	492334	492335	2
Deletion	Chr10	701639	701640	2
Deletion	Chr4	1104389	1104389	1
Deletion	Chr6	1284839	1284867	29
Deletion	Chr8	1417392	1417403	12
Deletion	Chr8	1474088	1474089	2
Deletion	Chr1	2186291	2186291	1	LOC_Os01g04780
Deletion	Chr2	2706071	2706071	1	LOC_Os02g05570
Deletion	Chr10	3219385	3219385	1
Deletion	Chr10	3284305	3284305	1	LOC_Os10g06390
Deletion	Chr7	3291978	3291978	1
Deletion	Chr10	3481001	3695000	214000	27
Deletion	Chr6	3674996	3674996	1
Deletion	Chr10	3756918	3756927	10
Deletion	Chr5	3921096	3921098	3
Deletion	Chr9	4183164	4183164	1
Deletion	Chr8	4522754	4522754	1
Deletion	Chr10	4528745	4528754	10
Deletion	Chr10	4617001	4851000	234000	43
Deletion	Chr6	4745706	4745708	3
Deletion	Chr8	4754318	4754318	1
Deletion	Chr9	4803131	4803131	1
Deletion	Chr11	4957334	4957357	24	LOC_Os11g09250
Deletion	Chr10	5019579	5019584	6
Deletion	Chr8	5045955	5045961	7
Deletion	Chr10	5123859	5123859	1
Deletion	Chr10	5182266	5182266	1
Deletion	Chr10	5266001	5347000	81000	13
Deletion	Chr6	5322872	5322872	1
Deletion	Chr10	5360001	5393000	33000	6
Deletion	Chr10	5408001	5511000	103000	10
Deletion	Chr10	5409757	5409757	1
Deletion	Chr6	5483038	5483049	12
Deletion	Chr10	5514001	5549000	35000	3
Deletion	Chr8	5559955	5559955	1
Deletion	Chr10	5671001	5692000	21000	3
Deletion	Chr4	5784208	5784208	1
Deletion	Chr8	6369051	6369051	1
Deletion	Chr7	6384770	6384770	1
Deletion	Chr7	6649414	6649414	1
Deletion	Chr4	6745825	6745825	1	LOC_Os04g12230
Deletion	Chr11	6821015	6821016	2
Deletion	Chr2	6881231	6881231	1	LOC_Os02g12980
Deletion	Chr10	7068439	7068441	3
Deletion	Chr8	7189549	7189549	1
Deletion	Chr9	7369753	7369792	40
Deletion	Chr5	7789398	7789398	1	LOC_Os05g13990
Deletion	Chr4	7793373	7793373	1
Deletion	Chr7	7882039	7882041	3
Deletion	Chr11	7952584	7952584	1
Deletion	Chr11	8180483	8180486	4
Deletion	Chr7	8275735	8275735	1
Deletion	Chr10	8336442	8336442	1
Deletion	Chr1	8338422	8338427	6
Deletion	Chr6	8591280	8591280	1
Deletion	Chr6	9010070	9010070	1
Deletion	Chr11	9040401	9040401	1
Deletion	Chr12	9150145	9150146	2
Deletion	Chr11	9150219	9150219	1	LOC_Os11g16530
Deletion	Chr10	9218590	9218604	15
Deletion	Chr3	9280516	9280536	21
Deletion	Chr12	9452541	9452541	1
Deletion	Chr7	9793142	9793142	1
Deletion	Chr4	9835295	9835296	2	LOC_Os04g17890
Deletion	Chr8	9866852	9866852	1	LOC_Os08g16180
Deletion	Chr6	9948568	9948568	1	LOC_Os06g17160
Deletion	Chr7	9953565	9953565	1
Deletion	Chr12	10033322	10033322	1	LOC_Os12g17510
Deletion	Chr5	10145633	10145634	2	LOC_Os05g17630
Deletion	Chr4	10158458	10158465	8
Deletion	Chr7	10226090	10226090	1
Deletion	Chr4	10281761	10281761	1
Deletion	Chr1	10424099	10424099	1
Deletion	Chr4	10548414	10548420	7	LOC_Os04g18980
Deletion	Chr5	10591073	10591073	1
Deletion	Chr11	10599395	10599395	1	LOC_Os11g18710
Deletion	Chr5	10622104	10622104	1
Deletion	Chr7	10689181	10689181	1	LOC_Os07g18060
Deletion	Chr8	10863963	10863963	1
Deletion	Chr7	10967417	10967418	2	LOC_Os07g18530
Deletion	Chr5	11140225	11140225	1
Deletion	Chr1	11184022	11184022	1	LOC_Os01g19720
Deletion	Chr5	11526210	11526210	1
Deletion	Chr7	11811826	11811837	12
Deletion	Chr6	11941538	11941538	1	LOC_Os06g20730
Deletion	Chr9	12060476	12060477	2
Deletion	Chr5	12075856	12075856	1
Deletion	Chr11	12108413	12108413	1
Deletion	Chr11	12317372	12317372	1
Deletion	Chr10	12599310	12599329	20
Deletion	Chr4	13306934	13306934	1
Deletion	Chr11	13426060	13426060	1
Deletion	Chr3	13485337	13485339	3
Deletion	Chr2	13636193	13636234	42
Deletion	Chr4	13731582	13731582	1
Deletion	Chr1	13864321	13864334	14
Deletion	Chr8	14004537	14004537	1
Deletion	Chr11	14068798	14068799	2
Deletion	Chr12	14137706	14137706	1
Deletion	Chr10	14393678	14393688	11
Deletion	Chr7	14696082	14696082	1	LOC_Os07g25630
Deletion	Chr10	15179631	15179631	1
Deletion	Chr12	15540968	15540968	1
Deletion	Chr1	15602530	15602546	17
Deletion	Chr11	15633592	15633592	1
Deletion	Chr7	15827465	15827509	45
Deletion	Chr5	15971443	15971443	1
Deletion	Chr4	16246135	16246135	1
Deletion	Chr10	16577859	16577859	1
Deletion	Chr11	16629562	16629562	1
Deletion	Chr7	16643871	16643872	2
Deletion	Chr11	16716218	16716218	1
Deletion	Chr1	16842151	16842153	3	LOC_Os01g29910
Deletion	Chr10	16879628	16879628	1	LOC_Os10g32124
Deletion	Chr8	17056951	17056951	1	LOC_Os08g27990
Deletion	Chr9	17057864	17057864	1
Deletion	Chr8	17077937	17077953	17
Deletion	Chr3	17629651	17629654	4
Deletion	Chr7	17732737	17732769	33
Deletion	Chr3	17767447	17767449	3	LOC_Os03g31200
Deletion	Chr8	17983830	17983844	15
Deletion	Chr12	18132684	18132684	1	LOC_Os12g30214
Deletion	Chr12	18132852	18132852	1
Deletion	Chr12	18826500	18826500	1	LOC_Os12g31280
Deletion	Chr3	19709953	19709976	24	LOC_Os03g35560
Deletion	Chr3	19781222	19781224	3
Deletion	Chr10	20340780	20340780	1
Deletion	Chr6	20389245	20389262	18	LOC_Os06g35040
Deletion	Chr12	20726635	20726654	20
Deletion	Chr2	20743416	20743416	1
Deletion	Chr3	20804478	20804478	1
Deletion	Chr4	21020644	21020730	87
Deletion	Chr8	21147069	21147071	3
Deletion	Chr2	21674243	21674243	1
Deletion	Chr5	21989314	21989314	1	LOC_Os05g37580
Deletion	Chr6	22419689	22419712	24
Deletion	Chr9	22456585	22456596	12
Deletion	Chr10	22897618	22897629	12	LOC_Os10g42470
Deletion	Chr2	23236071	23236071	1
Deletion	Chr11	23768115	23768115	1	LOC_Os11g39870
Deletion	Chr8	24502364	24502364	1
Deletion	Chr6	24550144	24550144	1
Deletion	Chr8	24813537	24813537	1	LOC_Os08g39260
Deletion	Chr5	24884813	24884842	30
Deletion	Chr11	25072336	25072336	1	LOC_Os11g41760
Deletion	Chr8	25183551	25183571	21
Deletion	Chr6	25817953	25817955	3
Deletion	Chr7	26198954	26198954	1	LOC_Os07g43780
Deletion	Chr3	26559864	26559864	1	LOC_Os03g46970
Deletion	Chr11	26622499	26622499	1
Deletion	Chr3	26900011	26900026	16
Deletion	Chr8	26918970	26918970	1
Deletion	Chr4	27007832	27007833	2
Deletion	Chr5	27276306	27276306	1	LOC_Os05g47610
Deletion	Chr7	27362691	27362697	7
Deletion	Chr11	27463442	27463513	72
Deletion	Chr3	28044767	28044780	14	LOC_Os03g49240
Deletion	Chr1	28128011	28128011	1
Deletion	Chr3	28718047	28718059	13
Deletion	Chr6	29193522	29193536	15
Deletion	Chr6	29310444	29310444	1
Deletion	Chr6	29613748	29613748	1
Deletion	Chr1	29861491	29861493	3	LOC_Os01g51950
Deletion	Chr6	29909392	29909411	20
Deletion	Chr6	29914096	29914096	1
Deletion	Chr2	30190701	30190702	2	LOC_Os02g49400
Deletion	Chr1	32403175	32403178	4
Deletion	Chr2	33706081	33706083	3	LOC_Os02g55010
Deletion	Chr1	34011951	34011959	9
Deletion	Chr4	34032517	34032518	2	LOC_Os04g57110
Deletion	Chr4	34600245	34600245	1
Deletion	Chr1	35938629	35938631	3
Deletion	Chr1	36569903	36569916	14
Deletion	Chr1	43264101	43264107	7

Insertions: 143

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12434839	12434840	2
Insertion	Chr1	12973391	12973391	1
Insertion	Chr1	13644667	13644672	6
Insertion	Chr1	15314768	15314768	1
Insertion	Chr1	15753846	15753846	1
Insertion	Chr1	1824554	1824615	62
Insertion	Chr1	19859248	19859248	1
Insertion	Chr1	22204161	22204161	1
Insertion	Chr1	22683720	22683720	1
Insertion	Chr1	23062464	23062464	1
Insertion	Chr1	23783012	23783057	46
Insertion	Chr1	26020394	26020394	1
Insertion	Chr1	28925543	28925584	42
Insertion	Chr1	35047848	35047848	1
Insertion	Chr10	10048241	10048243	3
Insertion	Chr10	10067093	10067093	1
Insertion	Chr10	15069317	15069318	2
Insertion	Chr10	18044504	18044504	1
Insertion	Chr10	21685681	21685682	2
Insertion	Chr10	3243880	3243880	1
Insertion	Chr10	3573049	3573051	3	LOC_Os10g06840
Insertion	Chr10	5172216	5172232	17
Insertion	Chr10	5401918	5401918	1
Insertion	Chr10	5528250	5528250	1
Insertion	Chr10	5892515	5892515	1
Insertion	Chr10	6324404	6324404	1
Insertion	Chr10	6326283	6326283	1
Insertion	Chr10	7080943	7080943	1
Insertion	Chr10	8388381	8388381	1
Insertion	Chr11	11173699	11173699	1
Insertion	Chr11	13356703	13356703	1	LOC_Os11g23200
Insertion	Chr11	15086416	15086419	4
Insertion	Chr11	16485055	16485056	2
Insertion	Chr11	18726225	18726226	2
Insertion	Chr11	22505826	22505940	115
Insertion	Chr11	23721245	23721245	1
Insertion	Chr11	25683696	25683696	1
Insertion	Chr11	25692687	25692687	1
Insertion	Chr11	27039209	27039209	1
Insertion	Chr11	28352361	28352400	40
Insertion	Chr12	12059218	12059218	1
Insertion	Chr12	12663077	12663077	1
Insertion	Chr12	13361956	13361959	4
Insertion	Chr12	14279212	14279212	1	LOC_Os12g24890
Insertion	Chr12	16949077	16949077	1
Insertion	Chr12	17115290	17115290	1
Insertion	Chr12	18435672	18435672	1
Insertion	Chr12	19017568	19017568	1
Insertion	Chr12	2115006	2115006	1
Insertion	Chr12	21358901	21358901	1
Insertion	Chr12	2998730	2998730	1
Insertion	Chr12	2998737	2998737	1
Insertion	Chr12	4131798	4131813	16
Insertion	Chr12	4277147	4277147	1
Insertion	Chr12	8218403	8218404	2	LOC_Os12g14420
Insertion	Chr2	10005624	10005624	1
Insertion	Chr2	11546562	11546565	4
Insertion	Chr2	12571117	12571117	1
Insertion	Chr2	14767637	14767637	1	LOC_Os02g25330
Insertion	Chr2	21223828	21223828	1
Insertion	Chr2	22613716	22613716	1
Insertion	Chr2	25300498	25300498	1
Insertion	Chr2	33502228	33502229	2
Insertion	Chr2	33575254	33575254	1
Insertion	Chr3	13369901	13369901	1
Insertion	Chr3	18960402	18960405	4	LOC_Os03g33140
Insertion	Chr3	19640311	19640311	1
Insertion	Chr3	19770685	19770686	2
Insertion	Chr3	19857077	19857077	1
Insertion	Chr3	21568278	21568280	3
Insertion	Chr3	22841372	22841372	1
Insertion	Chr3	25568270	25568270	1
Insertion	Chr3	26757031	26757031	1
Insertion	Chr3	29762039	29762040	2
Insertion	Chr3	6257999	6257999	1
Insertion	Chr3	664894	664894	1
Insertion	Chr4	10322075	10322075	1
Insertion	Chr4	10487668	10487668	1
Insertion	Chr4	11182996	11183010	15
Insertion	Chr4	13537384	13537384	1
Insertion	Chr4	13731531	13731531	1
Insertion	Chr4	15267460	15267460	1
Insertion	Chr4	15715307	15715307	1
Insertion	Chr4	15903728	15903728	1
Insertion	Chr4	22697409	22697409	1
Insertion	Chr4	2586849	2586849	1
Insertion	Chr4	30405277	30405277	1
Insertion	Chr4	35261571	35261571	1
Insertion	Chr4	5770706	5770707	2
Insertion	Chr4	7238958	7238963	6
Insertion	Chr5	10000302	10000302	1
Insertion	Chr5	10724235	10724236	2
Insertion	Chr5	11130990	11130990	1
Insertion	Chr5	11176743	11176743	1
Insertion	Chr5	11525637	11525637	1
Insertion	Chr5	12952156	12952156	1
Insertion	Chr5	14248420	14248420	1
Insertion	Chr5	15012379	15012406	28
Insertion	Chr5	22232098	22232098	1
Insertion	Chr5	23890190	23890190	1
Insertion	Chr5	26916891	26916891	1
Insertion	Chr5	29879238	29879238	1
Insertion	Chr5	3884937	3884937	1	LOC_Os05g07310
Insertion	Chr5	571305	571305	1
Insertion	Chr5	6652240	6652240	1
Insertion	Chr5	7261195	7261196	2
Insertion	Chr5	8763698	8763698	1
Insertion	Chr5	8819528	8819528	1
Insertion	Chr6	11480235	11480236	2
Insertion	Chr6	18648236	18648236	1	LOC_Os06g32060
Insertion	Chr6	20376991	20376991	1
Insertion	Chr6	21789993	21789993	1
Insertion	Chr6	21920856	21920857	2
Insertion	Chr6	2195880	2195880	1
Insertion	Chr6	25377852	25377852	1
Insertion	Chr6	29300028	29300058	31
Insertion	Chr6	29973722	29973722	1
Insertion	Chr6	5599467	5599470	4
Insertion	Chr7	12841341	12841341	1
Insertion	Chr7	24131678	24131730	53
Insertion	Chr7	6013040	6013040	1
Insertion	Chr7	9759239	9759239	1
Insertion	Chr7	9800906	9800907	2
Insertion	Chr8	11825142	11825219	78
Insertion	Chr8	12039186	12039187	2
Insertion	Chr8	13866577	13866577	1	LOC_Os08g23020
Insertion	Chr8	17278684	17278684	1
Insertion	Chr8	18910341	18910341	1
Insertion	Chr8	21921897	21921897	1
Insertion	Chr8	6490988	6490988	1
Insertion	Chr8	7315208	7315208	1
Insertion	Chr8	8401645	8401647	3
Insertion	Chr8	8500155	8500155	1
Insertion	Chr9	1024844	1024845	2
Insertion	Chr9	12901131	12901131	1
Insertion	Chr9	181242	181242	1
Insertion	Chr9	22886602	22886602	1
Insertion	Chr9	2962177	2962177	1
Insertion	Chr9	3260785	3260785	1
Insertion	Chr9	5756084	5756092	9
Insertion	Chr9	6413842	6413842	1
Insertion	Chr9	9157084	9157136	53
Insertion	Chr9	9990744	9990744	1

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr2	1922610	Chr1	33520969
Translocation	Chr10	3480096	Chr2	670580
Translocation	Chr10	3480686	Chr4	34612287
Translocation	Chr4	24548516	Chr3	3032708
Translocation	Chr4	24549557	Chr3	3032697
Translocation	Chr4	34611636	Chr2	670611

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