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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10327797	A-C	HET	INTERGENIC
SBS	Chr1	34425837	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g59540
SBS	Chr1	42382042	T-A	HET	INTERGENIC
SBS	Chr2	3901740	G-A	HET	SYNONYMOUS_STOP
SBS	Chr2	10199560	T-A	HOMO	INTRON
SBS	Chr2	12125224	C-T	HET	INTERGENIC
SBS	Chr2	19886019	A-G	HET	UTR_3_PRIME
SBS	Chr2	28388137	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr3	4920288	T-C	HOMO	INTERGENIC
SBS	Chr3	15542750	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27140
SBS	Chr3	15909072	G-T	HET	INTRON
SBS	Chr4	1605980	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	15325223	C-A	HET	STOP_GAINED	LOC_Os04g26290
SBS	Chr5	13180573	C-A	HET	INTERGENIC
SBS	Chr5	15281078	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	18217872	T-C	HOMO	INTRON
SBS	Chr5	19653417	T-C	HOMO	INTERGENIC
SBS	Chr5	20369899	T-A	HOMO	INTERGENIC
SBS	Chr6	17296728	A-G	HET	INTERGENIC
SBS	Chr6	25778143	G-A	HOMO	INTERGENIC
SBS	Chr7	8268647	G-A	HET	INTRON
SBS	Chr7	10664984	C-T	HET	INTERGENIC
SBS	Chr7	18745419	G-T	HET	INTERGENIC
SBS	Chr9	71858	C-A	HET	INTERGENIC
SBS	Chr10	1030548	C-A	HET	INTERGENIC
SBS	Chr10	9274750	A-G	HET	INTERGENIC
SBS	Chr10	15163093	C-T	HOMO	INTERGENIC
SBS	Chr11	4361218	T-G	HOMO	INTERGENIC
SBS	Chr11	14480752	G-A	HOMO	INTRON
SBS	Chr12	9791088	C-T	HET	INTERGENIC
SBS	Chr12	9835918	G-T	HET	INTERGENIC
SBS	Chr12	13321587	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23530
SBS	Chr12	18846915	T-A	HET	INTERGENIC
SBS	Chr12	18846916	C-A	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1159000	1159011	11
Deletion	Chr4	4018403	4018417	14
Deletion	Chr6	5281200	5281210	10
Deletion	Chr5	5296032	5296041	9
Deletion	Chr1	7519615	7519617	2	LOC_Os01g13490
Deletion	Chr1	8096121	8096126	5	LOC_Os01g14450
Deletion	Chr1	10339849	10339855	6
Deletion	Chr9	10828811	11075974	247163	36
Deletion	Chr5	12377892	12377903	11	LOC_Os05g21040
Deletion	Chr6	14606073	14606090	17
Deletion	Chr11	17124311	17124314	3
Deletion	Chr7	17189893	17189895	2
Deletion	Chr6	17694583	17694590	7
Deletion	Chr9	20148851	20148858	7	LOC_Os09g34130
Deletion	Chr8	20627747	20627748	1	LOC_Os08g33160
Deletion	Chr10	21418965	21419021	56
Deletion	Chr12	21770770	21770789	19
Deletion	Chr1	23437474	23437513	39
Deletion	Chr2	23875310	23875312	2
Deletion	Chr1	25324505	25324517	12
Deletion	Chr12	25630446	25630504	58
Deletion	Chr2	28532323	28532327	4
Deletion	Chr1	34313108	34313116	8	LOC_Os01g59350

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	22281753	22281768	16	LOC_Os03g40100
Insertion	Chr1	8938808	8938810	3
Insertion	Chr5	24126885	24126885	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10822710	11075945	LOC_Os09g18070
Inversion	Chr9	10823336	10828817

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9228980	Chr4	7080219
Translocation	Chr9	10822727	Chr2	1147581	LOC_Os02g02930
Translocation	Chr9	10823332	Chr2	1147574	LOC_Os02g02930
Translocation	Chr4	15030926	Chr2	10522458	2
Translocation	Chr10	15557702	Chr2	4988481
Translocation	Chr4	16416734	Chr1	32335247	LOC_Os01g56150
Translocation	Chr11	19861979	Chr7	7093263	2
Translocation	Chr9	19907845	Chr3	34805897	2
Translocation	Chr11	27826722	Chr6	25898116

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