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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5787958	G-A	HET	INTERGENIC
SBS	Chr1	9214305	G-A	HET	INTERGENIC
SBS	Chr1	25835109	G-A	HOMO	INTERGENIC
SBS	Chr1	40082275	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68990
SBS	Chr3	3288896	C-T	HET	INTRON
SBS	Chr3	27287837	C-T	HET	INTERGENIC
SBS	Chr4	3587908	C-T	HET	INTERGENIC
SBS	Chr4	10329885	G-A	HET	INTERGENIC
SBS	Chr4	19428464	C-T	HET	INTERGENIC
SBS	Chr4	27920078	A-T	HOMO	INTRON
SBS	Chr5	9779045	C-T	HET	INTERGENIC
SBS	Chr5	21433651	A-C	HOMO	INTRON
SBS	Chr6	6547491	G-A	HET	INTERGENIC
SBS	Chr6	22068715	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g37340
SBS	Chr7	15825732	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g27230
SBS	Chr8	2110528	T-C	HET	INTRON
SBS	Chr8	15902750	A-G	HOMO	INTERGENIC
SBS	Chr9	3659553	G-A	HOMO	INTRON
SBS	Chr9	17071614	T-C	HET	INTERGENIC
SBS	Chr10	3059229	G-A	HOMO	INTERGENIC
SBS	Chr10	3708102	T-C	HOMO	INTERGENIC
SBS	Chr10	13397231	C-A	HOMO	INTRON

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2505859	2505862	3	LOC_Os09g04720
Deletion	Chr1	3556922	3556933	11
Deletion	Chr5	3659755	3659758	3	LOC_Os05g06980
Deletion	Chr10	3681703	3681704	1
Deletion	Chr6	7967683	7967687	4	LOC_Os06g14280
Deletion	Chr11	8128348	8128351	3
Deletion	Chr12	8958515	8958529	14
Deletion	Chr10	10146001	10189000	43000	8
Deletion	Chr10	10203001	10614000	411000	63
Deletion	Chr1	10815639	10815649	10
Deletion	Chr8	13917901	13917902	1
Deletion	Chr8	14121224	14121253	29
Deletion	Chr9	14702458	14702459	1
Deletion	Chr3	14848619	14848620	1
Deletion	Chr7	15633138	15633139	1
Deletion	Chr12	15911001	16092000	181000	24
Deletion	Chr9	20534059	20534060	1
Deletion	Chr7	21833416	21833417	1
Deletion	Chr2	26291154	26291175	21
Deletion	Chr2	26348649	26363263	14614	LOC_Os02g43670
Deletion	Chr6	29608855	29608857	2	LOC_Os06g48900
Deletion	Chr3	32170465	32170473	8
Deletion	Chr3	36206712	36206725	13
Deletion	Chr1	41060784	41060787	3

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25300408	25300409	2
Insertion	Chr8	21320126	21320127	2
Insertion	Chr3	4286486	4286488	3
Insertion	Chr1	21498348	21498350	3
Insertion	Chr5	3640669	3640670	2
Insertion	Chr8	550145	550146	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr3	10822646	10834608
Inversion	Chr3	10822666	10834657
Inversion	Chr8	14993946	15969327
Inversion	Chr8	15845572	15928124
Inversion	Chr8	15848249	15928134
Inversion	Chr8	15965089	15969051

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6927448	Chr7	19968670	LOC_Os11g12410
Translocation	Chr8	14994014	Chr3	4141742	LOC_Os03g08110

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