Search Results
Mutant Information |
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Mutant Name | FN4862-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4862-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 32
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 21525647 | C-T | HET | ||
SBS | Chr1 | 35305386 | G-A | HET | ||
SBS | Chr1 | 39416958 | T-C | HET | ||
SBS | Chr1 | 41891679 | G-A | HET | ||
SBS | Chr1 | 42588613 | A-T | HET | ||
SBS | Chr2 | 185979 | T-A | HET | ||
SBS | Chr2 | 3659246 | A-G | HET | ||
SBS | Chr2 | 10998372 | G-T | HOMO | ||
SBS | Chr2 | 14668769 | A-G | HET | ||
SBS | Chr2 | 15003444 | G-A | HOMO | LOC_Os02g25650 | |
SBS | Chr2 | 23548822 | G-C | HET | LOC_Os02g38970 | |
SBS | Chr2 | 25841628 | G-C | HET | ||
SBS | Chr3 | 996193 | G-T | HET | ||
SBS | Chr4 | 4339294 | T-C | HET | ||
SBS | Chr4 | 9626315 | G-A | HOMO | ||
SBS | Chr4 | 15439170 | G-A | HOMO | ||
SBS | Chr4 | 26190331 | G-T | HET | ||
SBS | Chr5 | 2747942 | C-A | HOMO | ||
SBS | Chr5 | 8761021 | A-T | HET | ||
SBS | Chr5 | 21307838 | T-C | HET | ||
SBS | Chr5 | 21854550 | C-T | HET | ||
SBS | Chr6 | 1031964 | G-C | HET | ||
SBS | Chr6 | 29973101 | C-T | HOMO | ||
SBS | Chr7 | 1535226 | A-T | HET | ||
SBS | Chr7 | 5719782 | G-C | HOMO | ||
SBS | Chr7 | 20979321 | A-G | HOMO | ||
SBS | Chr11 | 9922579 | C-T | HET | ||
SBS | Chr11 | 11043849 | C-A | HET | ||
SBS | Chr11 | 11291614 | T-C | HET | LOC_Os11g19590 | |
SBS | Chr12 | 3270584 | C-G | HET | LOC_Os12g06720 | |
SBS | Chr12 | 4512001 | A-T | HOMO | ||
SBS | Chr12 | 7424845 | C-T | HOMO |
Deletions: 29
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 449557 | 449558 | 2 | |
Deletion | Chr12 | 3760330 | 3760339 | 10 | |
Deletion | Chr11 | 4780578 | 4780580 | 3 | LOC_Os11g09000 |
Deletion | Chr8 | 4823846 | 4823871 | 26 | LOC_Os08g08370 |
Deletion | Chr11 | 4838495 | 4838495 | 1 | |
Deletion | Chr10 | 5102586 | 5102622 | 37 | LOC_Os10g09460 |
Deletion | Chr8 | 5440131 | 5440161 | 31 | |
Deletion | Chr4 | 8682111 | 8682111 | 1 | |
Deletion | Chr5 | 8835501 | 8835524 | 24 | |
Deletion | Chr10 | 10314680 | 10314778 | 99 | |
Deletion | Chr4 | 11993956 | 11993957 | 2 | |
Deletion | Chr3 | 13399505 | 13399505 | 1 | |
Deletion | Chr3 | 13479599 | 13479867 | 269 | |
Deletion | Chr3 | 13503100 | 13503104 | 5 | |
Deletion | Chr3 | 13525733 | 13525734 | 2 | |
Deletion | Chr4 | 13754369 | 13754369 | 1 | |
Deletion | Chr12 | 14133670 | 14133702 | 33 | LOC_Os12g24680 |
Deletion | Chr11 | 14992007 | 14992007 | 1 | |
Deletion | Chr1 | 15165730 | 15165732 | 3 | |
Deletion | Chr12 | 17165668 | 17165668 | 1 | |
Deletion | Chr10 | 17561535 | 17561535 | 1 | |
Deletion | Chr10 | 19123557 | 19123626 | 70 | |
Deletion | Chr11 | 19795127 | 19795129 | 3 | LOC_Os11g33454 |
Deletion | Chr5 | 19836715 | 19836715 | 1 | |
Deletion | Chr7 | 21189031 | 21189042 | 12 | |
Deletion | Chr8 | 21294944 | 21294944 | 1 | |
Deletion | Chr11 | 26537400 | 26537400 | 1 | |
Deletion | Chr8 | 26956438 | 26956438 | 1 | |
Deletion | Chr1 | 33576628 | 33576628 | 1 |
Insertions: 36
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 20169290 | 20169291 | 2 | |
Insertion | Chr1 | 20570480 | 20570480 | 1 | |
Insertion | Chr2 | 9198288 | 9198288 | 1 | |
Insertion | Chr3 | 8369184 | 8369270 | 87 | |
Insertion | Chr3 | 8979539 | 8979539 | 1 | |
Insertion | Chr4 | 1774575 | 1774657 | 83 | |
Insertion | Chr4 | 10015592 | 10015592 | 1 | |
Insertion | Chr4 | 18571871 | 18571933 | 63 | |
Insertion | Chr4 | 29378842 | 29378843 | 2 | |
Insertion | Chr4 | 30674010 | 30674022 | 13 | |
Insertion | Chr5 | 15431998 | 15431998 | 1 | |
Insertion | Chr5 | 20080844 | 20080844 | 1 | |
Insertion | Chr5 | 28981387 | 28981407 | 21 | LOC_Os05g50540 |
Insertion | Chr6 | 8204456 | 8204467 | 12 | LOC_Os06g14570 |
Insertion | Chr6 | 12159237 | 12159238 | 2 | |
Insertion | Chr6 | 16630623 | 16630623 | 1 | LOC_Os06g29140 |
Insertion | Chr7 | 9846175 | 9846175 | 1 | |
Insertion | Chr7 | 9892461 | 9892461 | 1 | |
Insertion | Chr7 | 10465621 | 10465624 | 4 | |
Insertion | Chr7 | 17385277 | 17385286 | 10 | |
Insertion | Chr7 | 24542516 | 24542516 | 1 | |
Insertion | Chr7 | 26227806 | 26227806 | 1 | |
Insertion | Chr8 | 14242226 | 14242229 | 4 | |
Insertion | Chr8 | 25987762 | 25987762 | 1 | |
Insertion | Chr9 | 12792840 | 12792840 | 1 | |
Insertion | Chr10 | 6625968 | 6625968 | 1 | |
Insertion | Chr10 | 12451830 | 12451831 | 2 | |
Insertion | Chr10 | 13395688 | 13395691 | 4 | |
Insertion | Chr11 | 6305401 | 6305401 | 1 | |
Insertion | Chr11 | 12096620 | 12096699 | 80 | |
Insertion | Chr11 | 18755376 | 18755376 | 1 | |
Insertion | Chr11 | 26147165 | 26147165 | 1 | |
Insertion | Chr11 | 27146858 | 27146885 | 28 | |
Insertion | Chr2 | 16997009 | 16997013 | 5 | |
Insertion | Chr3 | 1046534 | 1046534 | 1 | |
Insertion | Chr7 | 16062022 | 16062025 | 4 |
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 14689801 | 14869659 | LOC_Os09g24680 |
Inversion | Chr6 | 17119256 | 17555208 | |
Inversion | Chr6 | 17119273 | 17555217 | |
Inversion | Chr2 | 22973093 | 23152749 | LOC_Os02g38290 |
Inversion | Chr3 | 33742528 | 33742955 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 19769404 | Chr2 | 19964341 |