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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	21525647	C-T	HET
SBS	Chr1	35305386	G-A	HET
SBS	Chr1	39416958	T-C	HET
SBS	Chr1	41891679	G-A	HET
SBS	Chr1	42588613	A-T	HET
SBS	Chr11	11043849	C-A	HET
SBS	Chr11	11291614	T-C	HET	LOC_Os11g19590
SBS	Chr11	9922579	C-T	HET
SBS	Chr12	3270584	C-G	HET	LOC_Os12g06720
SBS	Chr12	4512001	A-T	HOMO
SBS	Chr12	7424845	C-T	HOMO
SBS	Chr2	10998372	G-T	HOMO
SBS	Chr2	14668769	A-G	HET
SBS	Chr2	15003444	G-A	HOMO	LOC_Os02g25650
SBS	Chr2	185979	T-A	HET
SBS	Chr2	23548822	G-C	HET	LOC_Os02g38970
SBS	Chr2	25841628	G-C	HET
SBS	Chr2	3659246	A-G	HET
SBS	Chr3	996193	G-T	HET
SBS	Chr4	15439170	G-A	HOMO
SBS	Chr4	26190331	G-T	HET
SBS	Chr4	4339294	T-C	HET
SBS	Chr4	9626315	G-A	HOMO
SBS	Chr5	21307838	T-C	HET
SBS	Chr5	21854550	C-T	HET
SBS	Chr5	2747942	C-A	HOMO
SBS	Chr5	8761021	A-T	HET
SBS	Chr6	1031964	G-C	HET
SBS	Chr6	29973101	C-T	HOMO
SBS	Chr7	1535226	A-T	HET
SBS	Chr7	20979321	A-G	HOMO
SBS	Chr7	5719782	G-C	HOMO

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	449557	449558	2
Deletion	Chr12	3760330	3760339	10
Deletion	Chr11	4780578	4780580	3	LOC_Os11g09000
Deletion	Chr8	4823846	4823871	26	LOC_Os08g08370
Deletion	Chr11	4838495	4838495	1
Deletion	Chr10	5102586	5102622	37	LOC_Os10g09460
Deletion	Chr8	5440131	5440161	31
Deletion	Chr4	8682111	8682111	1
Deletion	Chr5	8835501	8835524	24
Deletion	Chr10	10314680	10314778	99
Deletion	Chr4	11993956	11993957	2
Deletion	Chr3	13399505	13399505	1
Deletion	Chr3	13479599	13479867	269
Deletion	Chr3	13503100	13503104	5
Deletion	Chr3	13525733	13525734	2
Deletion	Chr4	13754369	13754369	1
Deletion	Chr12	14133670	14133702	33	LOC_Os12g24680
Deletion	Chr11	14992007	14992007	1
Deletion	Chr1	15165730	15165732	3
Deletion	Chr12	17165668	17165668	1
Deletion	Chr10	17561535	17561535	1
Deletion	Chr10	19123557	19123626	70
Deletion	Chr11	19795127	19795129	3	LOC_Os11g33454
Deletion	Chr5	19836715	19836715	1
Deletion	Chr7	21189031	21189042	12
Deletion	Chr8	21294944	21294944	1
Deletion	Chr11	26537400	26537400	1
Deletion	Chr8	26956438	26956438	1
Deletion	Chr1	33576628	33576628	1

Insertions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20169290	20169291	2
Insertion	Chr1	20570480	20570480	1
Insertion	Chr10	12451830	12451831	2
Insertion	Chr10	13395688	13395691	4
Insertion	Chr10	6625968	6625968	1
Insertion	Chr11	12096620	12096699	80
Insertion	Chr11	18755376	18755376	1
Insertion	Chr11	26147165	26147165	1
Insertion	Chr11	27146858	27146885	28
Insertion	Chr11	6305401	6305401	1
Insertion	Chr2	16997009	16997013	5
Insertion	Chr2	9198288	9198288	1
Insertion	Chr3	1046534	1046534	1
Insertion	Chr3	8369184	8369270	87
Insertion	Chr3	8979539	8979539	1
Insertion	Chr4	10015592	10015592	1
Insertion	Chr4	1774575	1774657	83
Insertion	Chr4	18571871	18571933	63
Insertion	Chr4	29378842	29378843	2
Insertion	Chr4	30674010	30674022	13
Insertion	Chr5	15431998	15431998	1
Insertion	Chr5	20080844	20080844	1
Insertion	Chr5	28981387	28981407	21	LOC_Os05g50540
Insertion	Chr6	12159237	12159238	2
Insertion	Chr6	16630623	16630623	1	LOC_Os06g29140
Insertion	Chr6	8204456	8204467	12	LOC_Os06g14570
Insertion	Chr7	10465621	10465624	4
Insertion	Chr7	16062022	16062025	4
Insertion	Chr7	17385277	17385286	10
Insertion	Chr7	24542516	24542516	1
Insertion	Chr7	26227806	26227806	1
Insertion	Chr7	9846175	9846175	1
Insertion	Chr7	9892461	9892461	1
Insertion	Chr8	14242226	14242229	4
Insertion	Chr8	25987762	25987762	1
Insertion	Chr9	12792840	12792840	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	14689801	14869659	LOC_Os09g24680
Inversion	Chr6	17119256	17555208
Inversion	Chr6	17119273	17555217
Inversion	Chr2	22973093	23152749	LOC_Os02g38290
Inversion	Chr3	33742528	33742955

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	19769404	Chr2	19964341

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