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Mutant Information

Mutant Name	FN4872-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4872-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 50

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	14603420	G-C	HOMO
SBS	Chr1	14611368	C-T	HOMO	LOC_Os01g25800
SBS	Chr1	14611372	G-A	HOMO	LOC_Os01g25800
SBS	Chr1	21120832	G-T	HET
SBS	Chr1	24191400	C-A	HET
SBS	Chr1	27337303	G-T	HET	LOC_Os01g47770
SBS	Chr1	28988811	G-A	HET
SBS	Chr1	31195467	C-T	HET
SBS	Chr1	40074637	A-G	HET
SBS	Chr1	4757561	G-A	HET
SBS	Chr10	6606342	C-A	HET
SBS	Chr10	7701842	A-T	HET
SBS	Chr10	8313959	C-T	HET	LOC_Os10g16670
SBS	Chr11	17721043	A-T	HOMO
SBS	Chr11	27678413	G-A	HET
SBS	Chr12	13692477	T-G	HET
SBS	Chr12	1912059	G-A	HOMO
SBS	Chr12	22442640	C-T	HET
SBS	Chr12	25718277	C-A	HOMO
SBS	Chr2	18688409	G-A	HET
SBS	Chr2	35373384	A-G	HET	LOC_Os02g57760
SBS	Chr2	7348073	G-A	HET
SBS	Chr3	19191737	G-A	HET
SBS	Chr3	19686782	A-T	HET	LOC_Os03g35520
SBS	Chr3	6106320	A-C	HET
SBS	Chr4	11984242	G-T	HET
SBS	Chr4	13196031	G-A	HET
SBS	Chr4	21828019	G-A	HET
SBS	Chr4	23205530	T-A	HOMO
SBS	Chr5	11434206	T-C	HET	LOC_Os05g19620
SBS	Chr5	6710307	C-T	HET
SBS	Chr6	114527	T-C	HET
SBS	Chr6	13673447	C-A	HET
SBS	Chr6	21396519	T-C	HET
SBS	Chr6	26519411	C-T	HET
SBS	Chr6	27965814	G-A	HET
SBS	Chr7	15128156	A-T	HET
SBS	Chr7	17696653	C-A	HOMO
SBS	Chr7	2372695	A-G	HET
SBS	Chr7	551222	A-T	HET
SBS	Chr8	11309943	T-C	HET
SBS	Chr8	14131266	G-A	HET
SBS	Chr8	1454952	G-T	HOMO
SBS	Chr8	16260544	G-A	HET	LOC_Os08g26730
SBS	Chr8	19977055	G-A	HET	LOC_Os08g32240
SBS	Chr8	4076654	C-T	HET	LOC_Os08g07290
SBS	Chr8	4685227	C-A	HET
SBS	Chr8	6072687	A-C	HET
SBS	Chr9	13250478	C-T	HET
SBS	Chr9	18829377	G-T	HET

Deletions: 70

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	253772	253772	1
Deletion	Chr6	348267	348422	156	LOC_Os06g01590
Deletion	Chr8	775299	775340	42
Deletion	Chr6	1029607	1029612	6
Deletion	Chr4	2034630	2034631	2
Deletion	Chr8	2103561	2103586	26
Deletion	Chr9	2370519	2370534	16
Deletion	Chr8	2831615	2831619	5
Deletion	Chr7	3630565	3630572	8
Deletion	Chr4	3700240	3700240	1
Deletion	Chr8	3995432	3995482	51	LOC_Os08g07130
Deletion	Chr11	5200179	5200203	25
Deletion	Chr2	6294796	6294796	1
Deletion	Chr11	6320325	6320487	163
Deletion	Chr5	6434802	6434812	11
Deletion	Chr5	6765913	6765918	6
Deletion	Chr11	7812582	7812582	1
Deletion	Chr8	8142700	8142702	3
Deletion	Chr10	8557724	8557727	4
Deletion	Chr10	8920462	8920470	9
Deletion	Chr6	9711298	9711301	4
Deletion	Chr6	10042521	10042534	14
Deletion	Chr6	12879001	12921000	42000	6
Deletion	Chr4	13072467	13072468	2
Deletion	Chr9	13941412	13941422	11
Deletion	Chr3	14716160	14716160	1
Deletion	Chr2	14856111	14856111	1
Deletion	Chr4	15135652	15135869	218
Deletion	Chr10	16015001	16151000	136000	18
Deletion	Chr8	16458767	16458770	4
Deletion	Chr8	16538787	16538788	2	LOC_Os08g27070
Deletion	Chr2	16950516	16950516	1
Deletion	Chr3	17364983	17364985	3	LOC_Os03g30450
Deletion	Chr11	17728297	17728329	33
Deletion	Chr2	17832932	17832932	1
Deletion	Chr4	18347255	18347255	1
Deletion	Chr1	18594891	18594892	2
Deletion	Chr6	19551912	19551919	8
Deletion	Chr4	19604078	19604086	9
Deletion	Chr6	19712055	19712062	8
Deletion	Chr2	20016367	20016694	328
Deletion	Chr6	20136156	20136158	3
Deletion	Chr7	20725571	20725571	1
Deletion	Chr7	20777353	20777356	4
Deletion	Chr3	20803562	20803563	2
Deletion	Chr3	20886990	20886992	3
Deletion	Chr3	21502197	21502216	20	LOC_Os03g38740
Deletion	Chr1	22228238	22228276	39	LOC_Os01g39464
Deletion	Chr5	22508052	22508053	2
Deletion	Chr11	22751784	22751790	7
Deletion	Chr5	22753001	22883000	130000	22
Deletion	Chr3	23129324	23129343	20
Deletion	Chr2	25045001	25155000	110000	14
Deletion	Chr8	25552116	25552143	28
Deletion	Chr12	25627668	25627676	9	LOC_Os12g41350
Deletion	Chr7	25628745	25628752	8
Deletion	Chr5	25732012	25732012	1
Deletion	Chr12	26187457	26187488	32
Deletion	Chr2	27289974	27290017	44
Deletion	Chr8	27441796	27441798	3
Deletion	Chr11	27620747	27620845	99
Deletion	Chr6	28977950	28977950	1	LOC_Os06g47900
Deletion	Chr7	29320877	29320877	1
Deletion	Chr6	29337801	29337852	52
Deletion	Chr4	30820448	30820452	5
Deletion	Chr2	31226408	31226408	1
Deletion	Chr2	31619160	31619172	13
Deletion	Chr3	33496354	33496355	2
Deletion	Chr2	35345387	35345400	14	LOC_Os02g57710
Deletion	Chr3	36224916	36224917	2

Insertions: 34

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	17634591	17634671	81
Insertion	Chr1	28306762	28306762	1
Insertion	Chr1	43149559	43149559	1
Insertion	Chr11	15578672	15578672	1
Insertion	Chr11	22794299	22794337	39
Insertion	Chr11	25386036	25386119	84
Insertion	Chr11	27625718	27625719	2
Insertion	Chr12	11007901	11007902	2
Insertion	Chr12	17680366	17680407	42
Insertion	Chr12	23754643	23754644	2
Insertion	Chr12	2625654	2625654	1
Insertion	Chr2	1705226	1705229	4
Insertion	Chr2	17891277	17891327	51
Insertion	Chr2	23462455	23462455	1
Insertion	Chr3	15859880	15859881	2
Insertion	Chr3	25388899	25388929	31
Insertion	Chr3	36156175	36156180	6
Insertion	Chr4	20974079	20974084	6
Insertion	Chr4	24563404	24563446	43
Insertion	Chr4	7618518	7618521	4
Insertion	Chr5	11023810	11023854	45
Insertion	Chr5	16070146	16070147	2
Insertion	Chr5	17248510	17248554	45
Insertion	Chr5	17878543	17878617	75
Insertion	Chr5	19766461	19766461	1
Insertion	Chr5	27403303	27403303	1
Insertion	Chr5	5356217	5356220	4
Insertion	Chr6	21694693	21694693	1
Insertion	Chr6	7774776	7774780	5
Insertion	Chr7	11606141	11606141	1
Insertion	Chr7	12248590	12248593	4
Insertion	Chr7	23232380	23232435	56
Insertion	Chr7	6490423	6490423	1
Insertion	Chr8	14336763	14336778	16

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1700804	1700931
Inversion	Chr12	13122681	13789299
Inversion	Chr12	13122689	13789300
Inversion	Chr10	15678098	15998869
Inversion	Chr10	15680265	16150490	LOC_Os10g30156

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	14735412	Chr7	15984557
Translocation	Chr11	14736087	Chr7	15984578

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