Search Results
Mutant Information |
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Mutant Name | FN488-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN488-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 43
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 1862719 | C-A | HOMO | INTERGENIC | |
SBS | Chr1 | 11421333 | C-A | HET | INTERGENIC | |
SBS | Chr1 | 19211662 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g34800 |
SBS | Chr1 | 33192619 | C-T | HOMO | INTRON | |
SBS | Chr1 | 34637602 | G-A | HOMO | INTRON | |
SBS | Chr1 | 39380384 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 4440718 | T-G | HOMO | INTRON | |
SBS | Chr2 | 8253107 | T-A | HET | INTERGENIC | |
SBS | Chr2 | 16075430 | T-A | HOMO | INTERGENIC | |
SBS | Chr2 | 20544901 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 32689999 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr2 | 33488113 | C-T | HET | INTRON | |
SBS | Chr3 | 6534502 | T-C | HET | INTERGENIC | |
SBS | Chr3 | 8408103 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g15360 |
SBS | Chr3 | 8408104 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g15360 |
SBS | Chr3 | 12514739 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 13565552 | A-C | HOMO | INTERGENIC | |
SBS | Chr3 | 32214388 | A-G | HOMO | INTERGENIC | |
SBS | Chr4 | 22414660 | C-G | HET | UTR_5_PRIME | |
SBS | Chr4 | 22903263 | G-T | HOMO | INTRON | |
SBS | Chr4 | 25532159 | T-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g43130 |
SBS | Chr4 | 31103461 | G-A | HOMO | INTERGENIC | |
SBS | Chr6 | 20184463 | T-A | HET | INTERGENIC | |
SBS | Chr6 | 20184464 | T-A | HET | INTERGENIC | |
SBS | Chr6 | 22677815 | C-T | HOMO | INTERGENIC | |
SBS | Chr6 | 31199284 | G-A | HOMO | INTERGENIC | |
SBS | Chr7 | 6521274 | T-A | HET | INTRON | |
SBS | Chr8 | 1959719 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr8 | 9385661 | A-T | HET | INTRON | |
SBS | Chr8 | 15976251 | C-A | HET | SYNONYMOUS_CODING | |
SBS | Chr8 | 28284060 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 12101135 | G-A | HOMO | INTERGENIC | |
SBS | Chr10 | 14015593 | C-G | HET | INTERGENIC | |
SBS | Chr11 | 9546637 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 9546638 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 10512913 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 13719505 | C-T | HET | INTRON | |
SBS | Chr11 | 22839130 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 4755836 | G-T | HET | UTR_3_PRIME | |
SBS | Chr12 | 5415173 | T-C | HET | INTERGENIC | |
SBS | Chr12 | 8730990 | G-A | HET | STOP_GAINED | LOC_Os12g15314 |
SBS | Chr12 | 10082461 | T-A | HET | INTERGENIC | |
SBS | Chr12 | 26282178 | C-T | HET | INTERGENIC |
Deletions: 25
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 3070913 | 3172435 | 101522 | 12 |
Deletion | Chr3 | 7680728 | 7680731 | 3 | |
Deletion | Chr9 | 8859972 | 8859974 | 2 | |
Deletion | Chr9 | 9751350 | 9835231 | 83881 | 17 |
Deletion | Chr9 | 9922824 | 9922839 | 15 | LOC_Os09g16260 |
Deletion | Chr2 | 10866535 | 10866546 | 11 | LOC_Os02g18650 |
Deletion | Chr6 | 11994353 | 12018335 | 23982 | 3 |
Deletion | Chr4 | 12196256 | 12196263 | 7 | |
Deletion | Chr5 | 12595947 | 12595948 | 1 | |
Deletion | Chr5 | 12922167 | 12922181 | 14 | |
Deletion | Chr1 | 13306268 | 13307275 | 1007 | |
Deletion | Chr10 | 14645764 | 14645776 | 12 | |
Deletion | Chr10 | 15311567 | 15311571 | 4 | |
Deletion | Chr6 | 15600972 | 15600999 | 27 | |
Deletion | Chr1 | 16684292 | 16684293 | 1 | |
Deletion | Chr4 | 17412344 | 17412350 | 6 | |
Deletion | Chr3 | 17940029 | 17940042 | 13 | LOC_Os03g31490 |
Deletion | Chr12 | 19441316 | 19441335 | 19 | LOC_Os12g32210 |
Deletion | Chr11 | 19949118 | 19949120 | 2 | |
Deletion | Chr5 | 20588653 | 20588662 | 9 | |
Deletion | Chr10 | 21038695 | 21038699 | 4 | LOC_Os10g39430 |
Deletion | Chr1 | 24556694 | 24556701 | 7 | |
Deletion | Chr3 | 24815001 | 24839000 | 24000 | 6 |
Deletion | Chr1 | 32965152 | 32965172 | 20 | |
Deletion | Chr3 | 34790527 | 34790536 | 9 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr5 | 7919575 | 7919576 | 2 | |
Insertion | Chr11 | 17519776 | 17519778 | 3 | |
Insertion | Chr3 | 12876099 | 12876099 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 8847878 | 15937110 | 2 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 2068129 | Chr3 | 20771698 | |
Translocation | Chr12 | 4746038 | Chr9 | 13583070 | |
Translocation | Chr11 | 6225754 | Chr9 | 14083408 | LOC_Os11g11240 |
Translocation | Chr3 | 11784504 | Chr1 | 21798612 | |
Translocation | Chr11 | 27264195 | Chr9 | 12172766 | LOC_Os09g20284 |
Translocation | Chr3 | 34416788 | Chr2 | 5772738 | LOC_Os03g60550 |