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Mutant Information

Mutant Name	FN488-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN488-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11421333	C-A	HET	INTERGENIC
SBS	Chr1	1862719	C-A	HOMO	INTERGENIC
SBS	Chr1	19211662	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34800
SBS	Chr1	33192619	C-T	HOMO	INTRON
SBS	Chr1	34637602	G-A	HOMO	INTRON
SBS	Chr1	39380384	C-T	HET	INTERGENIC
SBS	Chr10	12101135	G-A	HOMO	INTERGENIC
SBS	Chr10	14015593	C-G	HET	INTERGENIC
SBS	Chr11	10512913	G-A	HET	INTERGENIC
SBS	Chr11	13719505	C-T	HET	INTRON
SBS	Chr11	22839130	C-T	HET	INTERGENIC
SBS	Chr11	9546637	C-A	HET	INTERGENIC
SBS	Chr11	9546638	C-T	HET	INTERGENIC
SBS	Chr12	10082461	T-A	HET	INTERGENIC
SBS	Chr12	26282178	C-T	HET	INTERGENIC
SBS	Chr12	4755836	G-T	HET	UTR_3_PRIME
SBS	Chr12	5415173	T-C	HET	INTERGENIC
SBS	Chr12	8730990	G-A	HET	STOP_GAINED	LOC_Os12g15314
SBS	Chr2	16075430	T-A	HOMO	INTERGENIC
SBS	Chr2	20544901	C-T	HET	INTERGENIC
SBS	Chr2	32689999	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	33488113	C-T	HET	INTRON
SBS	Chr2	4440718	T-G	HOMO	INTRON
SBS	Chr2	8253107	T-A	HET	INTERGENIC
SBS	Chr3	12514739	C-T	HET	INTERGENIC
SBS	Chr3	13565552	A-C	HOMO	INTERGENIC
SBS	Chr3	32214388	A-G	HOMO	INTERGENIC
SBS	Chr3	6534502	T-C	HET	INTERGENIC
SBS	Chr3	8408103	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15360
SBS	Chr3	8408104	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15360
SBS	Chr4	22414660	C-G	HET	UTR_5_PRIME
SBS	Chr4	22903263	G-T	HOMO	INTRON
SBS	Chr4	25532159	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g43130
SBS	Chr4	31103461	G-A	HOMO	INTERGENIC
SBS	Chr6	20184463	T-A	HET	INTERGENIC
SBS	Chr6	20184464	T-A	HET	INTERGENIC
SBS	Chr6	22677815	C-T	HOMO	INTERGENIC
SBS	Chr6	31199284	G-A	HOMO	INTERGENIC
SBS	Chr7	6521274	T-A	HET	INTRON
SBS	Chr8	15976251	C-A	HET	SYNONYMOUS_CODING
SBS	Chr8	1959719	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	28284060	C-T	HET	INTERGENIC
SBS	Chr8	9385661	A-T	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	3070913	3172435	101522	12
Deletion	Chr3	7680728	7680731	3
Deletion	Chr9	8859972	8859974	2
Deletion	Chr9	9751350	9835231	83881	17
Deletion	Chr9	9922824	9922839	15	LOC_Os09g16260
Deletion	Chr2	10866535	10866546	11	LOC_Os02g18650
Deletion	Chr6	11994353	12018335	23982	3
Deletion	Chr4	12196256	12196263	7
Deletion	Chr5	12595947	12595948	1
Deletion	Chr5	12922167	12922181	14
Deletion	Chr1	13306268	13307275	1007
Deletion	Chr10	14645764	14645776	12
Deletion	Chr10	15311567	15311571	4
Deletion	Chr6	15600972	15600999	27
Deletion	Chr1	16684292	16684293	1
Deletion	Chr4	17412344	17412350	6
Deletion	Chr3	17940029	17940042	13	LOC_Os03g31490
Deletion	Chr12	19441316	19441335	19	LOC_Os12g32210
Deletion	Chr11	19949118	19949120	2
Deletion	Chr5	20588653	20588662	9
Deletion	Chr10	21038695	21038699	4	LOC_Os10g39430
Deletion	Chr1	24556694	24556701	7
Deletion	Chr3	24815001	24839000	24000	6
Deletion	Chr1	32965152	32965172	20
Deletion	Chr3	34790527	34790536	9

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	17519776	17519778	3
Insertion	Chr3	12876099	12876099	1
Insertion	Chr5	7919575	7919576	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8847878	15937110	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2068129	Chr3	20771698
Translocation	Chr12	4746038	Chr9	13583070
Translocation	Chr11	6225754	Chr9	14083408	LOC_Os11g11240
Translocation	Chr3	11784504	Chr1	21798612
Translocation	Chr11	27264195	Chr9	12172766	LOC_Os09g20284
Translocation	Chr3	34416788	Chr2	5772738	LOC_Os03g60550

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