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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16141487	G-T	HET	INTERGENIC
SBS	Chr1	16141488	A-T	HET	INTERGENIC
SBS	Chr1	31942738	T-G	HET	INTERGENIC
SBS	Chr10	13108715	C-T	HOMO	INTERGENIC
SBS	Chr10	14914272	C-T	HOMO	INTERGENIC
SBS	Chr10	19082288	A-G	HOMO	INTERGENIC
SBS	Chr12	9292667	C-T	HET	INTERGENIC
SBS	Chr3	3148820	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06280
SBS	Chr3	32482479	G-A	HOMO	INTERGENIC
SBS	Chr4	19640934	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	16878175	C-T	HET	INTERGENIC
SBS	Chr5	18094805	G-A	HET	INTRON
SBS	Chr5	18094806	G-A	HET	INTRON
SBS	Chr5	19786993	A-G	HET	INTERGENIC
SBS	Chr5	20943766	C-T	HET	INTERGENIC
SBS	Chr5	239217	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	26899096	C-T	HOMO	INTERGENIC
SBS	Chr6	16704622	A-G	HET	INTRON
SBS	Chr6	5495712	G-A	HOMO	INTERGENIC
SBS	Chr7	10499034	G-C	HET	INTERGENIC
SBS	Chr7	17358016	G-A	HET	INTERGENIC
SBS	Chr7	9786289	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	13964633	C-T	HET	INTERGENIC
SBS	Chr8	25643283	C-T	HOMO	INTERGENIC
SBS	Chr9	11165165	G-A	HET	SYNONYMOUS_CODING

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	783385	783392	7
Deletion	Chr5	2102781	2102794	13	LOC_Os05g04530
Deletion	Chr4	5023424	5023457	33
Deletion	Chr5	5782372	5782374	2	LOC_Os05g10610
Deletion	Chr9	6829524	6829528	4
Deletion	Chr5	7613987	7613993	6	LOC_Os05g13740
Deletion	Chr7	7924013	7924034	21
Deletion	Chr8	8912810	8912819	9
Deletion	Chr9	9228853	9235209	6356	2
Deletion	Chr4	10707001	10890000	183000	29
Deletion	Chr2	12824651	12824656	5	LOC_Os02g21590
Deletion	Chr5	13804073	13804074	1
Deletion	Chr5	15527185	15527186	1
Deletion	Chr8	16572355	16572357	2	LOC_Os08g27120
Deletion	Chr5	18099258	18099266	8	LOC_Os05g31130
Deletion	Chr8	18612794	18612796	2
Deletion	Chr2	19041253	19041254	1	LOC_Os02g32240
Deletion	Chr2	19234683	19234731	48
Deletion	Chr9	19243394	19243404	10
Deletion	Chr4	19498802	19498807	5	LOC_Os04g32490
Deletion	Chr4	21261300	21261301	1
Deletion	Chr3	24861723	24861731	8	LOC_Os03g44240
Deletion	Chr6	25468156	25468162	6	LOC_Os06g42370
Deletion	Chr2	25952255	25952257	2	LOC_Os02g43090
Deletion	Chr5	26899000	26899006	6
Deletion	Chr1	28561197	28561199	2
Deletion	Chr1	28633686	28633687	1
Deletion	Chr4	28833472	28833477	5
Deletion	Chr2	35223680	35223690	10	LOC_Os02g57480

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3142676	3142677	2
Insertion	Chr11	1897182	1897183	2
Insertion	Chr2	15314956	15314958	3
Insertion	Chr4	988630	988630	1
Insertion	Chr6	6032714	6032714	1	LOC_Os06g11430
Insertion	Chr7	11740182	11740183	2
Insertion	Chr7	23386232	23386233	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7135469	8290314	LOC_Os09g12480
Inversion	Chr7	9814302	9913521	2
Inversion	Chr7	9836063	9913526	LOC_Os07g16860
Inversion	Chr5	16618582	16912988
Inversion	Chr1	20603224	23080540

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	4141741	Chr2	17320616	LOC_Os03g08110
Translocation	Chr9	9234527	Chr1	32632617	2
Translocation	Chr9	9235200	Chr1	32632613	LOC_Os01g56590
Translocation	Chr7	9836050	Chr4	13688950	LOC_Os04g23930
Translocation	Chr8	10754473	Chr6	19260583	LOC_Os08g17580
Translocation	Chr4	13688963	Chr3	928732	LOC_Os04g23930
Translocation	Chr4	13690611	Chr3	928698	LOC_Os04g23940

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr9	8714036	9363157	649121

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